CLUSTAL W Alignment of phytoplasmas associated with rosaceae family (16 S RNA seq)

Strawberry              --------------------------------------------CAAGTCGAACGGAAGG 16
Strawberryphylloid      ------------------------------------------------------------
Appleproliferation      ------------------------------------------------------------
Pear                    ------------------------------------------------------------
Peachyellow             ------TTGATCCTGGNTCAGGATGAACGCWGGCGGCGTGCCTAATACATGCAAGTCGAA 54
Peardecline             ------TTTGATCCTAGTCAGGATGAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAA 54
Apple                   ----------------------------------------CCTAATACATGCAAGTCGAA 20
Almond                  AAGAGTTTGATCCTGGCTCAGGATTAACGCTGGCGGCGCGCCTAATACATGCAAGTCGAA 60
Fragaria                ------------------------------------------------------------
Rubus                   ---------------------------------------------------------GGA 3
Peachrosette            ------------------------------------------------------------
Littlepeach             ------------------------------------------------------------
Chokecherry             ------------------------------------------------------------
Apricot                 ------------------------------------------------------------
                                                                                    

Strawberry              TTAAGCAATTA-AACTTTAGTGGCGAACGGGCGAGTT-AAGAGGTAAGCAATCTGCCCCT 74
Strawberryphylloid      ------------------------------------------------------------
Appleproliferation      ------------------------------------------------------------
Pear                    ----------------------------------------CACGTAAGTAACCTACCTCT 20
Peachyellow             CGGAAACTTTT-AGTTTCAGTGGCGAACGGGTGAGT--AACACGTAAGTAACCTACCTTT 111
Peardecline             CGGAAACTTTT-AGTTTCAGTGGCGAACGGGTGAGT--AACACGTAAGTAACCTACCTTT 111
Apple                   CCCNNNCTTT--AGTTTTAGTGGCGAACGGGTGAGT--AACACGTAAGTAATCTGCCTCT 76
Almond                  CGGAAACCTTCGGGTTTTAGTGGCGAACGGGTGAGT--AACACGTAAGCAACCTGCCTTT 118
Fragaria                ------------------------------------------------------------
Rubus                   GATCCTTCAAAAGGTCTTAGTGGCGAACGGGTGAGTAACACACGTAAGTAACCTACCTTT 63
Peachrosette            ------------------------------------------------------------
Littlepeach             ------------------------------------------------------------
Chokecherry             ------------------------------------------------------------
Apricot                 ------------------------------------------------------------
                                                                                    

Strawberry              AAGACGAGGATAACAGTCGGTAAACGACAAGTCGAACGGAA---GGAGATAAGAAGGCAT 131
Strawberryphylloid      --------------------GAAACGACTGCTAAGACTGGA-TAGGAGACAAGAAGGCAT 39
Appleproliferation      ------------------------------------------------------------
Pear                    TAGACGAGGATAACAGTTGG-AAACGACTGCTAAGACTGGA-TAGGAAGTTTTAAGGCAT 78
Peachyellow             CAGACGAGGATAACAGTTGG-AAACGACTGCTAAGACTGGAATAGGAAGTTTTCAGGCAT 170
Peardecline             CAGACGAGGATAACAGTTGG-AAACGACTGCTAAGACTGGA-TAGGAAGTTTTAAGGCAT 169
Apple                   CAGACGAGGATAACAGTTGG-AAACGACTGCTAAGACTGGA-TAGGAAGTTTTAAGGCAT 134
Almond                  AAGACGAGGATAACAATTGG-AAACAGTTGCTAAGACTGGA-TAGGAAATTAAAAGGCAT 176
Fragaria                ---------------------------CTGCTAAGACTGGA-TAGGAAATAAAAAGGCAT 32
Rubus                   AAGACGAGGATAACAATCGG-AAACGGTTGCTAAGACTGGA-TAGGAAACAAAAAGGCAT 121
Peachrosette            --------------------GAAACGACTGCTAAGACTGGA-TAGGAAAAGTAAAGGCAT 39
Littlepeach             --------------------GAAACGACTGCTAAGACTGGA-TAGGAAAAGTAAAGGCAT 39
Chokecherry             -------------------------------------------------AGTAAAGGCAT 11
Apricot                 -------------------------------------------------TTTTAAGACAT 11
                                                                                    

Strawberry              CTTTTTATCTTTAAAAGACCTCG--C--AAGAGGTATGCTTAGGGAAGAGCTTGCGTCAC 187
Strawberryphylloid      CTTTTTGTTTTTAAAAGACCTAG--C--AATAGGTATGCTTAGGGAGGAGCTTGCGTCAC 95
Appleproliferation      ------------------------------------------------------------
Pear                    CTTGAAACTTTTAAAAGACCCG------CAAGGGTATGCTGAGAGATGGGCTTGCGGCAC 132
Peachyellow             CTTGAAACTTTTAAAAGACCCG------CAAGGGTATGCTGAGAGATGGGCTTGCGGCAC 224
Peardecline             CTTGAAACTTTTAAAAGACCCG------CAAGGGTATGCTGAGAGATGGGCTTGCGGCAC 223
Apple                   CTTGAAACTTTTAAAAGACCTG------AAAGGGTATGCTGAGAGATGAGCTTGCGGCAC 188
Almond                  CTTTTAATTTTTAAAAGACCTTTTTC--GGAAGGTATGCTTAAAGAGGGGCTTGCGCCAC 234
Fragaria                CTTTTTGTTTTTAAAAGACCTTCTTACGAGAAGGTATGCTTAAAGAGGGGCTTGCGCCAC 92
Rubus                   CTTTTTGTTTTTAAAAGACCTTCTTC--GGAGGGTATGCTTAAAGAGAGGCTTGCGCCAC 179
Peachrosette            CTTTACTTTTTTAAAAGATCTTCTTT---GAAGGTATGCTTAAGGAGGGGCTTGCGACGC 96
Littlepeach             CTTTACTTTTTTAAAAGATCTTCTTT---GAAGGTATGCTTAAGGAGGGGCTTGCGACAC 96
Chokecherry             CTTTACTTTTTTAAAAGATCTTCTTT---GAAGGTATGCTTAAGGAGGGGCTTGCGACAC 68
Apricot                 CTCGAAACTTTTAAAAGACCCGC-------AAGGTATGCTGAGAGATGGGCTTGCGGCAC 64
                                                                                    

Strawberry              ATTAGTTAGTTGGTGGGGTAAAGGCCTACCAAGACTATGATGTGTAGCCGGACTGAGAGG 247
Strawberryphylloid      ATTAGTTAGTTGGTGGGGTAAAGGCTTACCAAGACTATGATGTGTAGCCGGGCTGAGAGG 155
Appleproliferation      ------------------------------------------------------------
Pear                    ATTAGTTAGTTGGTAAGGTAACGGCTTACCAAGACCATGATGTGTAGCTGGACTGAGAGG 192
Peachyellow             ATTAGTTAGTTGGTAAGGTAACGGCTTACCAAGACCATGATGTGTAGCTGGACTGAGAGG 284
Peardecline             ATTAGTTAGTTGGTAAGGTAACGGCTTACCAAGACCATGATGTGTAGCTGGACTGAGAGG 283
Apple                   ATTAGTTAGTTGGTAAGGTAAAGGCTTACCAAGACTATGATGTGTAGCTGGACTGAGAGG 248
Almond                  ATTAGTTAGTTGGTAAGGTAAAGGCTTACCAAGACGATGATGTGTAGCTGGACTGAGAGG 294
Fragaria                ATTAGTTAGTTGGTAGAGTAAAAGCCTACCAAGACGATGATGTGTAGCTGGACTGAGAGG 152
Rubus                   ATTAGTTAGTTGGTGAGGTAAAGGCTTACCAAGATTATGATGTGTAGCTGGACTGAGAGG 239
Peachrosette            ATTAGTTAGTTGGTAGGGTAAAGGCCTACCAAGACTATGATGTGTAGCTGGACTGAGAGG 156
Littlepeach             ATTAGTTAGTTGGTAGGGTAAAGGCCTACCAAGACTATGATGTGTAGCTGGACTGAGAGG 156
Chokecherry             ATTAGTTAGTTGGTAGGGTAAAGGCCTACCAAGACTATGATGTGTAGCTGGACTGAGAGG 128
Apricot                 ATTAGTTAGTTGGTAAGGTAATGGCTTACCAAGACTATGATGTGTAGCTGGACTGAGAGG 124
                                                                                    

Strawberry              TTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAAGG 307
Strawberryphylloid      TTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGG 215
Appleproliferation      ------------------------------------------------------------
Pear                    TTGAACGGCCACATTGGGACTGAGATACGGCCCAAACTCCTACGGGAGGCAGCAGTAAGG 252
Peachyellow             TTGAACGGCCACATTGGGACTGAGATACGGCCCAAACTCATACGG-AGGCAGCAGTAAGG 343
Peardecline             TTGAACGGCCACATTGGGACTGAGATACGGCCCAAACTCCTACGGGAGGCAGCAGTAAGG 343
Apple                   TTGAACGGCCACATTGGGACTGAGATACGGCCCAAACTCCTACGGGAGGCAGCAGTAAGG 308
Almond                  TTGAACAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAAGG 354
Fragaria                TTGAACAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGG 212
Rubus                   TTGAACAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGG 299
Peachrosette            TTGAACAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGG 216
Littlepeach             TTGAACAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGG 216
Chokecherry             TTGAACAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGG 188
Apricot                 TTGAACGGCCACATTGGGACTGAGATACGGCCCAAACTCCTACGGGAGGCAGCAGTAAGG 184
                                                                                    

Strawberry              AATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTATTTC 367
Strawberryphylloid      AATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTATTTC 275
Appleproliferation      ------------------------------------------------------------
Pear                    AATTTTCGGCAATGGAGGCAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTATTTA 312
Peachyellow             AATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTATTTA 403
Peardecline             AATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTATTTA 403
Apple                   AATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTATTTC 368
Almond                  AATTTTTGGCAATGGAGGAAACTCTGACCGAGCGACGCCGCGTGAACAATGAAGTACTTC 414
Fragaria                AATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTATTTC 272
Rubus                   AATTTTCGGCAATGGAGGAAACTCTGACCGAGCGACGCCGCGTGAACGATGAAGTATTTC 359
Peachrosette            AATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTACCTC 276
Littlepeach             AATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTACCTC 276
Chokecherry             AATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTACTTC 248
Apricot                 AATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTATTTA 244
                                                                                    

Strawberry              GGTACGTAAAGTTCTTTTATTAGGGAAGAAAAGATGGTGGAAAAACCATTATGACGGTAC 427
Strawberryphylloid      GGTACGTAAAGTTCTTTTATTAGGGAAGAATAAATGATGGAAAAATCATTCTGACGGTAC 335
Appleproliferation      ------------------------------------------------------------
Pear                    GGTATGTAAAGTTCTTTTATTAAAGAAGAAAAAATGATGGAAAAATCATTCTGACGGTAT 372
Peachyellow             GGTATGTAAAGTTCTTTTATTAAAGAAGAAAAAATGATGGAAAAATCATTCTGACGGTAT 463
Peardecline             GGTATGTAAAGTTCTTTTATTAAAGAAGAAAAAATGATGGAAAAATCATTCTGACGGTAT 463
Apple                   GGTATGTAAAGTTCTTTTATTAAAGAAGAAAAAATGGTGGAAAAATCATTCTGACGGTAT 428
Almond                  GGTATGTAAGGTTCTTTTATTGAAAAAGAAAAAATAGTGGAAAAACTATCTTGACATTAT 474
Fragaria                GGTATGTAAAGTTCTTTTATTGAAGAAGAAAAAGTAGTGGAAAAACTATATTGACGTTAT 332
Rubus                   GGTATGTAAAGTTCTTTTATTGAAGAAGAAAAAATAGTGGAAAAACTATCTTGACGTTAT 419
Peachrosette            GGTATGTAAAGTTCTTTTATTAAGGAAGAAAAAAGAGTGGAAAAACTCCCTTGACGGTAC 336
Littlepeach             GGTATGTAAAGTTCTTTTATTAAGGAAGAAAAAAGAGTGGAAAAACTCCCTTGACGGTAC 336
Chokecherry             GGTATGTAAAGTTCTTTTATTAAGGAAGAAAAAAGAGTGGAAAAACTCCCTTGACGGTAC 308
Apricot                 GGTACGTAAAGTTCTTTTATTAAAGAAGAAAAAATGATGGAAAAATCATTCTGACGGTAT 304
                                                                                    

Strawberry              CTAATGAATAAGCCCCGGCTAACTATGTGCCA-GCAGCCGCGGTAATACATAGGGGGCAA 486
Strawberryphylloid      CTAATGAATAAGCCCCGGCTAACTATGTGCCA-GCAGCCGCGGTAATACATAGGGGGCAA 394
Appleproliferation      ----------------------------------------------------GGGGGCAA 8
Pear                    TTAATGAATAAGCCCCGGCTAACTATGTGCCA-GCAGCTGCGGTAATACATGGGGGGCAA 431
Peachyellow             TTAATGAATAAGCCCCGGCTAACTATGTGCCA-GCAGCTGCGGTAATACATGGGGGGCAA 522
Peardecline             TTAATGAATAAGCCCCGGCTAACTATGTGCCA-GCAGCTGCGGTAATACATGGGGGGCAA 522
Apple                   TTAATGAATAAGCCCCGGCTAACTATGTGCCA-GCAGCTGCGGTAATACATAGGGGGCAA 487
Almond                  TCAATGAATAAGCCCCGGCTAATTATGTGCCA-GCAGCCGCGGTAATACATAAGGGGCGA 533
Fragaria                TCAATGAATAAGCCCCGGCTAACTATGTGCCA-GCAGCCGCGGTAAGACATAGGGGGCGA 391
Rubus                   TCAATGAATAAGCCCCGGCTAACTATGTGCCA-GCAGCCGCGGTAAGACATAGGGGGCGA 478
Peachrosette            TTAATGAATAAGCCCCGGCTAATTATGTGCCA-GCAGCCGCGGTAATACATAAGGGGCGA 395
Littlepeach             TTAATGAATAAGCCCCGGCTAATTATGTGCCA-ACAGCCGCGGTAATACATAAGGGGCGA 395
Chokecherry             TTAATGAATAAGCCCCGGCTAATTATGTGCCATATAATGGAGGT----CATCAGGAAAAC 364
Apricot                 TTAATGAATAAGCCCCGGCTAACTATGTGCCATATAGTGGAGGT----TATCAGGGATAC 360
                                                                             **     

Strawberry              GCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGTTTATGGTCT 546
Strawberryphylloid      GCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGTTTATGGTCT 454
Appleproliferation      GCGTTATCCGGATTTATTGGGCGTAAAGGGTGTGTAGGCGGTTTAATAAGTCTATGGTAT 68
Pear                    GCGTTATCCGGATTTATTGGGCGTAAAGGGTGCGTAGGCGGTTTAATAAGTCTATGGTAT 491
Peachyellow             GCGTTATCCGGATTTATTGGGCGTAAAGGGTGCGTAGGCGGTTTAATAAGTCTATGGTCT 582
Peardecline             GCGTTATCCGGATTTATTGGGCGTAAAGGGTGCGTAGGCGGTTTAATAAGTCTATGGTCT 582
Apple                   GCGTTATCCGGATTTATTGGGCGTAAAGGGTGTGTAGGCGGTTTAATAAATCTATGGTGT 547
Almond                  GCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTTGATAAGTCTATAGTTT 593
Fragaria                GCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCTGTTAGATAAGTCTATAATTT 451
Rubus                   GCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTAGATAAGTCTATAATTT 538
Peachrosette            GCGTAATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTTAATAAGTCTATAGTTT 455
Littlepeach             GCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTTAATAAGTCTATAGTTT 455
Chokecherry             AGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTG-AGATGTTAGGTTAAGTCC-TAAAAC 422
Apricot                 AGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTG-AGATGTTGGGTTAAGTCC-CGCAAC 418
                          **  * *    ** * *   *     *  * * **    *    *** *         

Strawberry              AAGTGCAATGCTTAACGTTGTGATGCTATAAAAACTGT-TTAGCTAGAGTTGGATAGAGG 605
Strawberryphylloid      AAGTGCAATGCTTAACATTGTGATGCTATAAAAACTGT-TTAGCTAGAGTAAGATAGAGG 513
Appleproliferation      AAGTTCAACGCTTAACGTTGTGATGCTATGGAAACTGT-TTGACTAGAGTTGGATAGAGG 127
Pear                    AAGTTCAACGCTTAACGTTGTGATGCTATAGAAACTGT-TTGACTAGAGTTGGATAGAGG 550
Peachyellow             AAGTTCAACGCTTAACGTTGTGATGCTATAGAAACTGT-TTGACTAGAGTTGGATAGAGG 641
Peardecline             AAGTTCAACGCTTAACGTTGTGATGCTATAGAAACTGT-TTGACTAGAGTTGGATAGAGG 641
Apple                   AAGTGCAACGCTCAACGTTGTGAAGCTATAGAAACTGT-TAGACTTGAGTTGGATAGAGG 606
Almond                  AATTGCAGTGCTTAACGCTGTACCGCTATAGAAACTGT-CTGACTAGAGTTAGATAGAGG 652
Fragaria                AATTTCAGTGCTTAACGCTGTCTTGTTATAGAAACTGTCTTGACTAGAGTGAGATAGAGG 511
Rubus                   AATTTCAGTGCTTAACGCTGTCTTGTTATAGAAACTGTCTTGACTAGAGTGAGATAGAGG 598
Peachrosette            AATTTCAGTGCTTAACGCTGTTGTGCTATAGAAACTGT-TTTACTAGAGTGAGATAGAGG 514
Littlepeach             AATTTCAGTGCTTAACGCTGTTGTGCTATAAAAACTGT-TTTACTAGAGTGAGATAGAGG 514
Chokecherry             GAGCGCAACCCTTGTCGTTA-GTTGCCAGCA----TGT---------AATGATGGGGACT 468
Apricot                 GAGCGCAACCCTTATCACTA-GTTACCATCA----TTT---------AGT--TGGGCACT 462
                         *   **   **   *  *        *       * *         * *       *  

Strawberry              CAAGTGGAATTCCATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACACCAGAAGCG 665
Strawberryphylloid      CAAGTGGAATTCCATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACACCAGTAGCG 573
Appleproliferation      CAAGTGGAATTCCATGTGTAGCGGTAAAATGCGTAAATATATGGAGGAACACCAGTAGCG 187
Pear                    CAAGTGGAATTCCATGTGTAGCGGTAAAATGCGTAAAGATATGGAGGAACACCAGTAGCG 610
Peachyellow             CAAGTGGAATTCCATGTGTAGCGGTAAAATGCGTAAAGATATGGAGGAACACCAGTAGCG 701
Peardecline             CAAGTGGAATTCCATGTGTAGCGGTAAAATGCGTAAAGATATGGAGGAACACCAGTAGCG 701
Apple                   CAAGTGGAATTCCATGTGTAGCGGTAAAATGCGTAAAGATATGGAGGAACACCAGTAGCG 666
Almond                  CAAGCGGAATTCCATGTGTAGCGGTAAAATGCGTAAATATATGGAGGAACACCAGAGGCG 712
Fragaria                CAAGCGGAATTCCATGTGTAGCGGTAAAATGTGTAAATATATGGAGGAACACCAGAAGCG 571
Rubus                   CAAGCGGAATTCCATGTGTAGCGGTAAAATGTGTAAATATATGGAGGAACACCAGAAGCG 658
Peachrosette            CAAGCGGAATTCCATGTGTAGCGGTAAAATGCGTAAATATATGGAGGAACACCAGAGGCG 574
Littlepeach             CAAGCGGAATTCCATGTGTAGCGGTAAAATGCGTAAATATATGGAGGAACACCAGAGGCG 574
Chokecherry             TTAACGAGACTGC-----CAATGAAAAATTGGAGGAAGGTGGGGATTA-CGTCAAATCAT 522
Apricot                 TTAGTGAGACTGC-----CAATGATAAATTGGAGGAAGGTGGGGATTA-CGTCAAATCAT 516
                          *  *  * * *      *  *  *** **    **  *  ***  * *  **      

Strawberry              AAGGCGGCTTGCTGGGTCTTAACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGA 725
Strawberryphylloid      AAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGA 633
Appleproliferation      AAGGCGGCTTGCTGGGTCTTAACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGA 247
Pear                    AAGGCGGCTTGCTGGGTCTTAACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGA 670
Peachyellow             AAGGCGGCTTGCTGGGTCTTAACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGA 761
Peardecline             AAGGCGGCTTGCTGGGTCTTAACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGA 761
Apple                   AAGGCGGCTTGCTGGGTCTTAACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGA 726
Almond                  TAGGCGGCTTGCTGGGTCTTAACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGA 772
Fragaria                TAGGCGGCTTGCTGGGTCTTTACTGACGCTGANGCACGAAAGCGTGGGTAGCAAACAGGA 631
Rubus                   TAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGA 718
Peachrosette            TAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGA 634
Littlepeach             TAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGA 634
Chokecherry             CATGCCCCTTAT--GATCTGGGCTACAAACGTGATACAATGGT---TGATACAAAGAGTA 577
Apricot                 CATGCCCCTTAT--GACCTGGGCTACAAACGTGATACAATGGC---TGTTACAAAGAGTA 571
                         * **  ***    *  **   **      *    ** *  *     *   **** ** *

Strawberry              TTAGATACCCTGGTAGTC--CACGCCCTAAACGATGAGTACTAAACA-TTGGGTA--AAA 780
Strawberryphylloid      TTAGATACCCTGGTAGTC--CACGCCGTAAACGATGAGTACTAAATG-TTGGGTA--AAA 688
Appleproliferation      TTAGATACCCTGGTAGTC--CACGCCGTAAACGATGAGTACTAAGTG-TTGGGTT--AAA 302
Pear                    TTAGATACCCTGGTAGTC--CACGCCGTAAACGATGAGTACTAAGTG-TTGGGTT--AAA 725
Peachyellow             TTAGATACCCTGGTAGTC--CACGCCGTAAACGATGAGTACTAAGTG-TTGGGTT--AAA 816
Peardecline             TTAGATACCCTGGTAGTC--CACGCCGTAAACGATGAGTACTAAGTG-TTGGGTT--AAA 816
Apple                   TTAGATACCCTGGTAGTC--CACGCCGTAAACGATGAGTACTAAGTGGTTGGGTT--AAA 782
Almond                  TTAGATACCCTGGTAGTC--CACGCCGTAAACGATGAGTACTAAGTG-TCGGGTTTTGGC 829
Fragaria                TTAGATACCCTGGTAGTC--CACGCCGTAAACGATGAGTACTAAGTGTTCGGGGTAAAAC 689
Rubus                   TTACATACCCTGGTACTC--CACGCTGTAAACGATGAGTACTAAGTGT-CGGGGTAAC-C 774
Peachrosette            TTAGATACCCTGGTAGTC--CACGCCGTAAACGATGAGTACTAAGTG-TCGGGTA--AAA 689
Littlepeach             TTAGATACCCTGGTAGTC--CACGCCGTAAACGATGAGTACTAAGTG-TCGGGTA--AAA 689
Chokecherry             GCTGAAACGCGAGTTCTTAGCCAATCTCAAAAAATCAAT-CTCAGTT--CGGATTGAAGT 634
Apricot                 GCTGAAACGTGAGTTTTTAGCAAATCTCAAAAAAACAGT-CTCAGTT--CGGATTGAAGT 628
                            * **    **  *   *       ***  *  * * ** *      **        

Strawberry              CCAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAA 840
Strawberryphylloid      CCAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAA 748
Appleproliferation      CCAGTGCTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAA 362
Pear                    CCAGTGCTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAA 785
Peachyellow             CCAGTGCTGAAGTTAACGCATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAA 876
Peardecline             CCAGTGCTGAAGTTAACGCATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAA 876
Apple                   CCAGGGCTGAAGTTAACACATTATGTACTCCGCTTGAGTAGTACGTACGCAAGTATGAAN 842
Almond                  TCGGTACTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAA 889
Fragaria                TCGGTACTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAA 749
Rubus                   TCGGTACTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAA 834
Peachrosette            CTGGTACTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAA 749
Littlepeach             CTGGTACTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAA 749
Chokecherry             CTGCAACTCGACTTCATGAAGTTGGAAT--CGCT--AGTAAT-CGCGAATCAGCATGTCG 689
Apricot                 CTGCAACTCGACTTCATGAAGTCGGAAT--CGCT--AGTAAT-CGCGAATCAGCATGTCG 683
                               *  * ** *   * *  * *   ***   **** * **      ** ***   

Strawberry              CTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGGTA 900
Strawberryphylloid      CTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGGTA 808
Appleproliferation      CTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGATA 422
Pear                    CTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGATA 845
Peachyellow             CTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGATA 936
Peardecline             CTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGATA 936
Apple                   CTTAAAGGAATTG-CGGGNCTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGATA 901
Almond                  CTTAAAGGAATTGACGGGACCCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGATA 949
Fragaria                CTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGATA 809
Rubus                   CTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGATA 894
Peachrosette            CTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGATA 809
Littlepeach             CTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGATA 809
Chokecherry             CGGTGAATAC-------------------------------------------------- 699
Apricot                 TGGTGAATAC-------------------------------------------------- 693
                             *  *                                                   

Strawberry              CCCGAAAAACCTCACCAGGTCTTGACATGCTTTTGCAAAGCGGTAGAAATATCGTGGAGG 960
Strawberryphylloid      CCCGAAAAACCTCACCAGGTCTTGACATGCTTCTGCAAAGCTGTAGAAACACAGTGGAGG 868
Appleproliferation      CACGAAAA-CCTTACCAGGTCTTGACATACT-CTGCAAAGCTATAGAAATATAGTGGAGG 480
Pear                    CACGAAAAACCTTACCAGGTCTTGACATACTCTG-CAAAGCTATAGAAATATAGTGGAGG 904
Peachyellow             CACGAAAAACCTTACCAGGTCTTGACATACTCTG-CAAAGCTATAGAAATATAGTGTAGG 995
Peardecline             CACGAAAAACCTTACCAGGTCTTGACATACTCTG-CAAAGCTATAGAAATATAGTGGAGG 995
Apple                   CGCGAAAANCCTTCCCAGGTCTTGACATAACGTGGCAAAGCTATTGAAAGATAGTGGAGG 961
Almond                  CACGAAAAACCTTACCAGGTCTTGACATAATTTTGCGACATTATAGAAATATAATGAAGG 1009
Fragaria                CACGAAAAATCTTACCAGGTCTTGACATACTCTG-CAAAGTTATAGAAATATATCGGAGG 868
Rubus                   CACGAAAAACCTTACCAGGTCTTGACATACTCTG-CAAAGCTATAGAAATATAGTGGAGG 953
Peachrosette            CACGAAAAACCTTACCAGGTCTTGACATTTTCTTGCGAAGTTATAGAAATATAATGGAGG 869
Littlepeach             CATGAAAAACCTTACCAGGTCTTGACATTTTCTTGCGAAGTTATAGAAATATAATGGAGG 869
Chokecherry             ------------------------------------------------------------
Apricot                 ------------------------------------------------------------
                                                                                    

Strawberry              TTATCAGAAGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTA 1020
Strawberryphylloid      TTATCAGTTGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTA 928
Appleproliferation      TTATCAGGGATACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTA 540
Pear                    TTATCAGGGATACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTA 964
Peachyellow             TTATCAGGGATACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTA 1055
Peardecline             TTATCAGGGATACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTA 1055
Apple                   TTATCCGCGTTACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTA 1021
Almond                  TTATCAGAATTACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTAGGTTA 1069
Fragaria                TTATCAGGGATACAGGTGGTGCATGGTTGTCGTCAGTTCGTGTCGTGAGATGTTAGGTTA 928
Rubus                   TTATCAGGGATACAGGTGGTGCATGGTTGTCGTCAGTTCGTGTCGTGAGATGTTAGGTTA 1013
Peachrosette            TCATCAGGAAAACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTAGGTTA 929
Littlepeach             TCATCAGGAAAACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTAGGTTA 929
Chokecherry             ------------------------------------------------------------
Apricot                 ------------------------------------------------------------
                                                                                    

Strawberry              AGTCCCGCAACGAGCGCAACCCTTGTTGTTAATTGCCATCATTAAGT--TGGGGACTTTA 1078
Strawberryphylloid      AGTCCCGCAACGAGCGCAACCCTTATTGTTAGTTGCCAGCACGTAATGGTGGGGACTTTA 988
Appleproliferation      AGTCCCGCAACGAGCGCAACCCTTATCGCTAGTTACCATCATTTAGT--TGGGCACTTTA 598
Pear                    AGTCCCGCAACGAGCGC------------------------------------------- 981
Peachyellow             AGTCCCGCAACGAGCGCAACCCTTATCGCTAGTTACCATCATTTAGT--TGGGCACTTTA 1113
Peardecline             AGTCCCGCAACGAGCGCAACCCTTATCGCTAGTTACCATCATTTAGT--TGGGCACTTTA 1113
Apple                   AGTCCCGCAACGAGCGCAACCCTTATTGCTAGTTACCATCATTTAGT--TGGGCACTTTA 1079
Almond                  AGTCCTAAAACGAGCGCAACCCTTGTCGTTAGTTGCGACCACATAATGGTGAGCACTTTA 1129
Fragaria                AGTCCTAAAACGAGCGCAACCCTTGTTGTTAATTGCCAGCACGTAATGGTGGGGACTTTA 988
Rubus                   AGTCCTAAAACGAACGCAACCCCTGTCGCTAGTTGCCAGCACGTAATGGTGGGGACTTTA 1073
Peachrosette            AGTCCTAAAACGAGCGCAACCCTTGTCGTTAGTTGCCAGCATGTAATGATGGGGACTTTA 989
Littlepeach             AGTCCTAAAACGAGCGCAACCCTTGTCGTTAGTTGCCAGCATGTAATGATGGGGACTTTA 989
Chokecherry             ------------------------------------------------------------
Apricot                 ------------------------------------------------------------
                                                                                    

Strawberry              GCAAGACTGCCAGTGATAAATTGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCT 1138
Strawberryphylloid      GCAAGACTGCCAGTGATAAATTGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCT 1048
Appleproliferation      GTGAGACTGCCAATGATAAATTGGAGGAAGGTGGGGATTACGTCAAATCATCATGCCCCT 658
Pear                    ------------------------------------------------------------
Peachyellow             GTGAGACTGCCAATGATAAATTGGAGGAAGGTGGGGATTACGTCAAATCATCATGCCCCT 1173
Peardecline             GTGAGACTGCCAATGATAAATTGGAGGAAGGTGGGGATTACGTCAAATCATCATGCCCCT 1173
Apple                   GTGAGACTGCCAATGATAAATTGGAGGAAGGTGGGGATTACGTCAAATCATCATGCCCCT 1139
Almond                  GCGAGACTGCCAATGAAAAATTGGAGGAAGGTGAGGATTACGTCAAATCATCATGCCCCT 1189
Fragaria                ACGAGACTGCCAATTAAACATTGGAGGAAGGTGAGGATTACGTCAAATCATCATGCCCCT 1048
Rubus                   GCGAGACTGCCAATTAAAAATTGGAGGAAGGTGGGGATAACGTCAAATCATCATGCCCCT 1133
Peachrosette            ACGAGACTGCCAATGAAAAATTGGAGGAAGGTGGGGATTACGTCAAATCATCATGCCCCT 1049
Littlepeach             ACGAGACTGCCAATGAAAAATTGGAGGAAGGTGGGGACTACGTCAAATCATCATGCCCCT 1049
Chokecherry             ------------------------------------------------------------
Apricot                 ------------------------------------------------------------
                                                                                    

Strawberry              TATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAAAGGGCAGCTAAAGCGTAAGC 1198
Strawberryphylloid      TATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAAAGGGTAGCTGAAACGCAAGT 1108
Appleproliferation      TATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAAAGAGTAGCTGAAGCGTGAGT 718
Pear                    ------------------------------------------------------------
Peachyellow             TATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAAAGAGTAGCTGAAGCGTGAGT 1233
Peardecline             TATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAAAGAGTAGCTGAAGCGTGAGT 1233
Apple                   TATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAAAGAGTAGCTGAAACGTGAGT 1199
Almond                  TATGATCTGGGCTACAAACGTGATACAATGGCTTTTACAAAGAGTAGCTACAACGTGAGT 1249
Fragaria                TATGATCTGGGCTACAAACGTGATACAATGGCTGTGACAAAGAGTAGCTGAAACGCGAGT 1108
Rubus                   TATGATCTGGGCTACAAACGTGATACAATGGCTATTACAAAGAGTAGCTGAAACGCGAGT 1193
Peachrosette            TATGATCTGGGCTACAAACGTGATACAATGGTTGATACAAAGAGCAGCTGAAACGCGAGT 1109
Littlepeach             TATGATCTGGGCTACAAACGTGATACAATGGTTGATACAAAGAGTAGCTGAAACGCGAGT 1109
Chokecherry             ------------------------------------------------------------
Apricot                 ------------------------------------------------------------
                                                                                    

Strawberry              TTTTGGCGAATCTCAAAAAAGCAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCAT 1258
Strawberryphylloid      TTTTGGCGAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCAT 1168
Appleproliferation      TTTTAGCAAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCAT 778
Pear                    ------------------------------------------------------------
Peachyellow             TTTTAGCAAATCTCATTAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCAT 1293
Peardecline             TTTTAGCAAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCAT 1293
Apple                   TCTTAGCCAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCAT 1259
Almond                  TTTTAGCCAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCAT 1309
Fragaria                TTTTAGCCAATCTCAAAAAAGCAGTCTCAGTTCGGATTGAAGTCTGTAACTCGACTTCAT 1168
Rubus                   TTTTAGCCAATCTCAAAAAGGTAGTCTCAGTACGGATTGAAGTCTGCAACTCGACTTCAT 1253
Peachrosette            TCTTAGCCAATCTCAAAAAATCAATCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCAT 1169
Littlepeach             TCTTAGCCAATCTCAAAAAATCAATCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCAT 1169
Chokecherry             ------------------------------------------------------------
Apricot                 ------------------------------------------------------------
                                                                                    

Strawberry              GAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTTCTCGGGGTT 1318
Strawberryphylloid      GAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTTCTCGGGGTT 1228
Appleproliferation      GAAGTCGGAATCGCTAGTAATCGCGAATCAGCATGTCG---------------------- 816
Pear                    ------------------------------------------------------------
Peachyellow             GAAGTCGGAATCGCTAGTAATCGCGAATCAGCATGTCGTGGTGAATACGTTCTCGGGGTT 1353
Peardecline             GAAGTCGGAATCGCTAGTAATCGCGAATCAGCATGTCGTGGTGAATACGTTCTCGGGGTT 1353
Apple                   GAAGTCGGAATCGCTAGTAATCGCGAATCAGCATGTCGTGGTGAATACGTTCTCGGGGTT 1319
Almond                  GAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTTCTCGGGGTT 1369
Fragaria                GAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGG------------------- 1209
Rubus                   GAAGCTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTTCTCGGGGTT 1313
Peachrosette            GAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTTCTCGGGGTT 1229
Littlepeach             GAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTTCTCGGGGTT 1229
Chokecherry             ------------------------------------------------------------
Apricot                 ------------------------------------------------------------
                                                                                    

Strawberry              TGTACACACCGCCCGTCAAACCACGAAAGTTGGCAATACCCAAAGCCGGTGGCCTAACTT 1378
Strawberryphylloid      TGTACACACCGCCCGTCA------------------------------------------ 1246
Appleproliferation      ------------------------------------------------------------
Pear                    ------------------------------------------------------------
Peachyellow             TGTACACACCGCCCGTCAAACCATGAAAGTTGACAATACCCGAAACCAGTAGCCTAACTT 1413
Peardecline             TGTACACACCGCCCGTCAAACCATGAAAGTTGACAATACCCGAAACCAGTAGCCTAACTT 1413
Apple                   TGTACACACCGCCCGTCAAACCACGAAAGTTGACAATACCCGAAACCAGTGGCCTAACTT 1379
Almond                  TGTACACACCGCCCGTCAAACCACGAAAGTTGATAATACCCAAAACCGGTCGCCTAACTT 1429
Fragaria                ------------------------------------------------------------
Rubus                   TGTACACACCGCCCGTCAAACCACGAAAGTTAGCAATACCCGAAAGCAGTGGCTTAACTT 1373
Peachrosette            TGTACACACCGCCCGTCA------------------------------------------ 1247
Littlepeach             TGTACACACCGCCCGTCA------------------------------------------ 1247
Chokecherry             ------------------------------------------------------------
Apricot                 ------------------------------------------------------------
                                                                                    

Strawberry              CGCAAGAAGAGGGAGCCGTCTAAGGTAGGGTTGATAATTGGGGTTAAGTCGTAACAAGGT 1438
Strawberryphylloid      ------------------------------------------------------------
Appleproliferation      ------------------------------------------------------------
Pear                    ------------------------------------------------------------
Peachyellow             GC--AAAAGAGGGAACTGTCTAAGGTAGGGTTGATGATTGGGGTTAAGTCGTAACAAGGT 1471
Peardecline             GC--AAAAGAGGGAACTGTCTAAGGTAGGGTTGATGATTGGGGTTAAGTCGTAACAAGGT 1471
Apple                   GT--AAAAGAGGGAACTGTCTAAGGTAGGGTTGATGATTGGGGTTAAGTCGTAACAAGGT 1437
Almond                  CGTCAGAAGAGGGAGCCGTCTAAGGTAGGGTCGATGATTGGGGTTAAGTCGTAACAAGGT 1489
Fragaria                ------------------------------------------------------------
Rubus                   TGCAAGAAGAGGGAGCTGTCTAAGGTAGGGTTGATGATTGGGGTTAAGTCGTAACAAGGT 1433
Peachrosette            ------------------------------------------------------------
Littlepeach             ------------------------------------------------------------
Chokecherry             ------------------------------------------------------------
Apricot                 ------------------------------------------------------------
                                                                                    

Strawberry              ATCCCTACCGGAAGGTGGGGATGGATCACCTCCTTTCTAAGGAAA------------AAA 1486
Strawberryphylloid      ------------------------------------------------------------
Appleproliferation      ------------------------------------------------------------
Pear                    ------------------------------------------------------------
Peachyellow             ATCCCTACCGGAAGGTGGGGATGGATCACCTCCTTTCTAAGGAAA------------ATA 1519
Peardecline             ATCCCTACCGGAAGGTGGGGATGGATCACCTCCTTTCTAAGGAAA------------ATA 1519
Apple                   ATCCCTACCGGAAGGTGGGGATGGATCACCTCCTTTCTAAGGAAA------------ATA 1485
Almond                  ATCCCTACCGGAAGGTGGGGATGGATCACCTCCTTTCTAAGGAAAC-----------ATA 1538
Fragaria                ------------------------------------------------------------
Rubus                   ATCCTTACCGGAAGGTGAGGATGGATCACCTCCTTTCTAAGGACATACATATAAAAATCA 1493
Peachrosette            ------------------------------------------------------------
Littlepeach             ------------------------------------------------------------
Chokecherry             ------------------------------------------------------------
Apricot                 ------------------------------------------------------------
                                                                                    

Strawberry              NNTAACCTTNTCCAGTTTNGGAGGCCTAAAAAAGGTTTTTGGTT------------TTTT 1534
Strawberryphylloid      ------------------------------------------------------------
Appleproliferation      ------------------------------------------------------------
Pear                    ------------------------------------------------------------
Peachyellow             TCATCTTCAGTTGTGAAAGACTTAAAAAAAAGTTTTTTATTTTTTAAGATAAAAATTAAT 1579
Peardecline             TCATCTTCAGTTGTGAAAGACTTAAAAAAAAGTTTTTTATTTTTTAAGATAAAAATTAAT 1579
Apple                   TCATCTTCAGTTGTGAAAGACTTAAAATAAGTTTTTTATTTAATAGAGTAACAACATATT 1545
Almond                  AAATCATCATCTTCAGTTTTGAAAGACTTAGTCAAGTTTTTCTGATTTATTTTGTTTTTT 1598
Fragaria                ------------------------------------------------------------
Rubus                   TCATCTTCAGTTTTGAAAGACTTAGGTTAAAATATAAGTTTTTCTTTTTATAAAAAAAGT 1553
Peachrosette            ------------------------------------------------------------
Littlepeach             ------------------------------------------------------------
Chokecherry             ------------------------------------------------------------
Apricot                 ------------------------------------------------------------
                                                                                    

Strawberry              AAGATTA----------------AGGGCCTATAGCTCAGTTGGTTAGAGCACACGCCTGA 1578
Strawberryphylloid      ------------------------------------------------------------
Appleproliferation      ------------------------------------------------------------
Pear                    ------------------------------------------------------------
Peachyellow             AATGGCC----------------GGGGCCTATAGCTCAGTTGGTTAGAGCACACGCCTGA 1623
Peardecline             AATGGCC----------------GGGGCCTATAGCTCAGTTGGTTAGAGCACACGCCTGA 1623
Apple                   ACGGTTT----------------GGGGCCTATAGCTCAGTTGGTTAGAGCACACGCCTGA 1589
Almond                  GATATCC----------------TGGGCCTATAGCTCAGTTGGTTAGAGCACACGCCTGA 1642
Fragaria                ------------------------------------------------------------
Rubus                   GTTTCTCTTATATAAAAGACCAAAGGGCCTATAGCTCAGTTGGTTAGAGCACACGCCTGA 1613
Peachrosette            ------------------------------------------------------------
Littlepeach             ------------------------------------------------------------
Chokecherry             ------------------------------------------------------------
Apricot                 ------------------------------------------------------------
                                                                                    

Strawberry              TAAGCGTGAGGTCGGTGGTTCAGGTCCATTTAGGCCCACCAAATAAAATAGGTCACATCT 1638
Strawberryphylloid      ------------------------------------------------------------
Appleproliferation      ------------------------------------------------------------
Pear                    ------------------------------------------------------------
Peachyellow             TAAGCGTGAGGTCGATGGTTCGAGTCCATTTAGGCCCACCAAAAATATTTAT-------- 1675
Peardecline             TAAGCGTGAGGTCGATGGTTCGAGTCCATTTAGGCCCACCAAAAATATTT---------- 1673
Apple                   TAAGCGTGAGGTCGATGGTTCAAGTCCATTTAGGCCCACCATATAGTTGATATTTCTAAT 1649
Almond                  TAAGCGTGAGGTCGGTGGTTCGAGTCCATTTAGGCCCACCAAACGTCTTAAGCGTGTTAT 1702
Fragaria                ------------------------------------------------------------
Rubus                   TAAGCGTGAGGTCGGTGGTTCAAGTCCACTTAGGCCCACCA---ATTTTATATCAGGAAA 1670
Peachrosette            ------------------------------------------------------------
Littlepeach             ------------------------------------------------------------
Chokecherry             ------------------------------------------------------------
Apricot                 ------------------------------------------------------------
                                                                                    

Strawberry              TAAAGGAAGCTCTTTGAAAAGTAGATAAACAAGCAAAGG----------TAAAAAAATCA 1688
Strawberryphylloid      ------------------------------------------------------------
Appleproliferation      ------------------------------------------------------------
Pear                    ------------------------------------------------------------
Peachyellow             ------------------------------------------------------------
Peardecline             ------------------------------------------------------------
Apple                   TAGCTCTTTGAAAAGTAGATAAATTTAAGGTTAAAGAAA----------TTAAAGAAAGT 1699
Almond                  CAAAAAAAGTTCTTTGAAAAGTAGATAAACAAGAGGACAGCGACCTTTATTAAAGGAAGT 1762
Fragaria                ------------------------------------------------------------
Rubus                   ATATTTACTTCGAAGAAAGTTCTTTGAAAAGTAGATAAACATGACTTGCTTAATTCAATT 1730
Peachrosette            ------------------------------------------------------------
Littlepeach             ------------------------------------------------------------
Chokecherry             ------------------------------------------------------------
Apricot                 ------------------------------------------------------------
                                                                                    

Strawberry              AAGAA------------------------------------------ 1693
Strawberryphylloid      -----------------------------------------------
Appleproliferation      -----------------------------------------------
Pear                    -----------------------------------------------
Peachyellow             -----------------------------------------------
Peardecline             -----------------------------------------------
Apple                   AAGGGCACACAGTGGATGCCTTGGCACTAAGAGCCGATGAAGGACGG 1746
Almond                  AAGGGCGTACAGTGGATGCCTTGGCACTAAGAGCCGATGAAGG---- 1805
Fragaria                -----------------------------------------------
Rubus                   AAATTTGAAGAAAGTAAGGGCGTACAGTGAATGCCTTGG-------- 1769
Peachrosette            -----------------------------------------------
Littlepeach             -----------------------------------------------
Chokecherry             -----------------------------------------------
Apricot                 -----------------------------------------------