CLUSTAL W alignment of phytoplasma associated with Poaceae family (16S rRNA seq):
Sorghum ------------------ATAAACCCTCCCCGCATCCTTATACATGCAACTCGAACCGAA 42
Mauritius_ ------------------------------------------------------------
Cynodon ------------------ATAAACCCTCCCGGCATCCTTATACATGCAAGTCGAACCGAA 42
Stolbur ------------------ATTAACCCTCCCGGCATCCTTATACATGCAAGTCGAACGGAA 42
typeE ------------------------------------------------------------
typeI ------------------------------------------------------------
typeH ------------------------------------------------------------
type ------------------------------------------------------------
typeC ------------------------------------------------------------
typeA ------------------------------------------------------------
group3 ------------------------------------------------------------
group4 ------------------------------------------------------------
Rice ----GTTTGATCCTGGCTCAGGATAAACGCTGGCGGCGTGCTTAATACATGCAAGTCGAA 56
typeJ ------------------------------------------------------------
Brachiaria ----GTTTGATCCTGGCTCAGGATTAACGCTGGCGGCGTGCTTAATACATGCAAGTCGAA 56
variantI -----TTTGATCCTGGCTCAGGATTACCGCTGCCGGCGTGCTTAATACATGCAAGTCGAA 55
variantII ------------------------------------------------------------
white ----GTTTGATCCTGGCTCAGGATAAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAA 56
typeB ------------------------------------------------------------
Maize ------AAGAGTTTGATCCTGGCTCAGGATTAACGCTGGCGGCGTGCCTAATACATGCAA 54
typeG ------------------------------------------------------------
Barley AAGAGTTTGATCCTGGCTCAGGATTAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAA 60
Saccharum ------------------------------------------------------------
Cubansugarcane ------------------------------------------------------------
Sugarcanegreen ------------------------------------------------------------
Bermudagrass ------------------------------------------------------------
Deltocephalus ------------------------------------------------------------
Sorghum GTTTAAGCA------ATTAAACTTTAGCGGCGAACGGGTGAGTAACGCGTAAGAATCTGC 96
Mauritius_ ------------------------------------------------------------
Cynodon GTTTAAGCA------ATTAAACTTTAGCGGCGAACGGGTGAGTAACGCGTAAGAATCTGC 96
Stolbur GTTTAAGCA------ATTAAACTTTAGCGGCGAACGGGTGAGTAACGCGTAAGAATCTGC 96
typeE ------------------------------------------------------------
typeI ------------------------------------------------------------
typeH ------------------------------------------------------------
type ------------------------------------------------------------
typeC ------------------------------------------------------------
typeA ------------------------------------------------------------
group3 ------------------------------------------------------------
group4 ------------------------------------------------------------
Rice CGGAAATTT------TCGGATTTTAGTGGCGAACGGGTGAGTAACACGTAAGTAACCTGC 110
typeJ ------------------------------------------------------------
Brachiaria CGGAAATCT------TCGGATTTTAGTGGCGAACGGGTGAGTAACACGTAAGTAACCTGC 110
variantI CGGAGATCT------TCGGATTTTAGTGGCGAACGGGTGAGTAACACGTAAGTAACCTGC 109
variantII ----------------------------------------------------TAACCTGC 8
white CGGAAATCT------TCGGATTTTAGTGGCGAACGGGTGAGTAACACGTAAGCAACCTGC 110
typeB ------------------------------------------------------------
Maize GTCGAACGG------AAGTTTAAGCAATTAAACTTTAGTGGCGAACGGGTGAGTAACGCG 108
typeG ------------------------------------------------------------
Barley CGGAAGTTTAAGCAATTAAACTTTAGTGGCGAACGGGTGAGTAACGCGTAAGCAATCTGC 120
Saccharum ------------------------------------------------------------
Cubansugarcane ------------------------------------------------------------
Sugarcanegreen ------------------------------------------------------------
Bermudagrass ------------------------------------------------------------
Deltocephalus ------------------------------------------------------------
Sorghum CCCTAAGACGACCATAACAGTTGGAAACGACTGCTAAGACTGGATA----GGAGATAAGA 152
Mauritius_ -------------------------AACGACTGCTAAGACTGGATTTTATGGAGATAAGA 35
Cynodon CCCTAAGACGACCATAACAGTTGGAAACGACTGCTAAGACTGGATA----GGAGATAAGA 152
Stolbur CCCTAAGACGACCATAACAGTTGGAAACGACTGCTAAGACTGGATA----GGAGATAAGA 152
typeE ------------------------------------------------------------
typeI ------------------------------------------------------------
typeH ------------------------------------------------------------
type ------------------------------------------------------------
typeC ------------------------------------------------------------
typeA ------------------------------------------------------------
group3 -----------------------GAAACGACTGCTAAGACTGGATA----GGAA-CAAGA 32
group4 -----------------------GAAACGACTGCTAAGACTGGATA----GGAAATAAAA 33
Rice CTTTAAGACGACCATAACAATTGGAAACAGTTGCTAAAACTGGATA----GGAAATTAAA 166
typeJ ------------------------------------------------------------
Brachiaria CTTTAAGACGAGGATAACAATTGGAAACAGTTGCTAAGACTGGATA----GGAAATTAGA 166
variantI CTTTAAGACGAGGATAACAATTGGAAACAGTTGCTAAGACTGGATA----GGAAATAAAA 165
variantII CTTTAGGACGAGGATATCAATTGGAAACAGTTGCTAAGACTGGATA----GGAAATAAAA 64
white CTTTAAGACGAGGATAACAATTGGAAACAGTTGCTAAGACTGGATA----GGAAATAAAA 166
typeB ------------------------------------------------------------
Maize TAAGCAATCTGCCCCTAAGACGAGGATAACAGTTGGAAACGACTGCTAAGACTGGATAGG 168
typeG ------------------------------------------------------------
Barley CCCTAAGACGAGGATAACAGTTGGAAACGACTGCTAAGACTGGATA----GGAGACAAGA 176
Saccharum ------------------------------------------------------------
Cubansugarcane ------------------------------------------------------------
Sugarcanegreen ------------------------------------------------------------
Bermudagrass ------------------------------------------------------------
Deltocephalus ------------------------------------------------------------
Sorghum AGGCATCTTTTTATTTTTAAAAG--ACCTAGCAATAGCTATGCTT-AGGGAAGAGCTTGC 209
Mauritius_ AGGCATCTTTTTATTTTTAAAAGC-ACCTAGCAATAGGTATGCTT-AGGGAAGAGCTTGC 93
Cynodon AGGCATCTTTTTATTTTTAAAAG--ACCTAGCAATAGCTATGCTT-AGGGAAGAGCTTGC 209
Stolbur AGGCATCTTTTTATTTTTAAAAG--ACCTAGCAATAGCTATGCTT-AGGGAAGAGCTTGC 209
typeE ------------------------------------------------------------
typeI ------------------------------------------------------------
typeH ------------------------------------------------------------
type ------------------------------------------------------------
typeC ------------------------------------------------------------
typeA ------------------------------------------------------------
group3 AGGCATCTTCTTGTTTTTAAAAGACCTAGT--AATAGGTATGCTT-AGGGAGGAGCTTGC 89
group4 AGGCATCTTTTTATTTTTAAAAGACCTTTTTCGGAAGGTATGCTT-AAAGAGGGGCTTGC 92
Rice AGGTATCTTTTAATTTTTAAAAGACTTCTTT-CGAAGGTATACTT-AAAGAGGGGCTTGC 224
typeJ ------------------------------------------------------------
Brachiaria AGGCATCTTTTAATTTTTAAAAGACCTTTTTCGAAAGGTATACTT-AAAGAGGGGCTTGC 225
variantI AGGCATCTTTTTATTTTTAAAAGACCTTTTTCGGAAGGTATGCTT-AAAGAGGGGCTTGC 224
variantII AGGCATCTTTTTATTTTTAAAAGACCTTTTTCGGAAGGTATGCTTTAAAGAGGGGCTTGC 124
white AGGCATCTTTTTATTTTTAAAAGACCTTTTTCGGAAGGTATGCTT-AAAGAGGGGCTTGC 225
typeB ------------------------------------------------------------
Maize AGACAAGAAGGCATCTTCTTGTTTTTAAAAGACCTAGCAATAGGTATGCTTAGGGAGGAG 228
typeG ------------------------------------------------------------
Barley GGGCATCTTCTTGTTTTTAAAAG--ACCTAGCAATAGGTATGCTT-AGGGAGGAGCTTGC 233
Saccharum ------------------------------------------------------------
Cubansugarcane ------------------------------------------------------------
Sugarcanegreen ------------------------------------------------------------
Bermudagrass ------------------------------------------------------------
Deltocephalus ------------------------------------------------------------
Sorghum GTCACATTAGTTAGTTGGTGGGGTAATGGCCT-ACCAAGAC--GATG-ATGTGTAGCCGG 265
Mauritius_ GTCACATTAGTTAGTTGGTGGGGTAATGGCCTCACCAAGACACGATGTATGTGTAGCCGG 153
Cynodon GTCACATTAGTTAGTTGGTGGGGTAATGGCCT-ACCAAGAC--GATG-ATGTGTAGCCGG 265
Stolbur GTCACATTAGTTAGTTGGTGGGGTAATGGCCT-ACCAAGAC--GATG-ATGTGTAGCCGG 265
typeE ------------------------------------------------------------
typeI ------------------------------------------------------------
typeH ------------------------------------------------------------
type ------------------------------------------------------------
typeC ------------------------------------------------------------
typeA ------------------------------------------------------------
group3 GTCACATTAGTTAGTTGGTGGGGTAAAGGCCT-ACCAAGAC--TATG-ATGTGTAGCCGG 145
group4 GTCACATTAGTTAGTTGGTAGGGTAAAGGCCT-ACCAAGAC--GATG-ATGTGTAGCTGG 148
Rice GGCACATTAGTTAGTTGGTAGGGTAATGGCCT-ACCAAGAC--TATG-ATGTGTAGCTGG 280
typeJ ------------------------------------------------------------
Brachiaria GGCACATTAGTTAGTTGGTAGGGTAAAAGCCT-ACCAAGAC--CATG-ATGTGTAGCTGG 281
variantI GGCACATTAGTTAGTTGGTAGGGTAAAGGCCT-ACCAAGAC--TATG-ATGTGTAGCTGG 280
variantII GGCACATTAGTTAGTTGGTAGGGTAAAGGCCT-ACCAAGAC--TATG-ATGTGTAGCTGG 180
white GTCACATTAGTTAGTTGGCAGGGTAAAGGCCT-ACCAAGAC--TATG-ATGTGTAGCTGG 281
typeB ------------------------------------------------------------
Maize CTTGCGTCACATTAGTTAGTTGGTGGGGTAAAGGCCTACCAAGACTATGATGTGTAGCCG 288
typeG ------------------------------------------------------------
Barley GTCACATTAGTTAGTTGGTGGGGTAAAGGCCT-ACCAAGAC--TATG-ATGTGTAGCCGG 289
Saccharum ------------------------------------------------------------
Cubansugarcane ------------------------------------------------------------
Sugarcanegreen ------------------------------------------------------------
Bermudagrass ------------------------------------------------------------
Deltocephalus ------------------------------------------------------------
Sorghum GCTGAGAGGTCGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCA 325
Mauritius_ GCTGAGAGGTCGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCA 213
Cynodon GCTGAGAGGTCGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCA 325
Stolbur GCTGAGAGGTCGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCA 325
typeE ------------------------------------------------------------
typeI ------------------------------------------------------------
typeH ------------------------------------------------------------
type ------------------------------------------------------------
typeC ------------------------------------------------------------
typeA ------------------------------------------------------------
group3 GCTGAGAGGTTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCA 205
group4 ACTGAGAGGTTGAACAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCA 208
Rice ACTGAGAGGTTGAACAGCCACATTGGGACTGAGACACGGCCCAAACTTCTACGGGAGGCA 340
typeJ ------------------------------------------------------------
Brachiaria ACTGAGAGGTTGAACAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCA 341
variantI ACTGAGAGGTTGAACAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCA 340
variantII ACTGAGAGGTTGAACAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCA 240
white ACTGAGAGGTTGAACAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCA 341
typeB ------------------------------------------------------------
Maize GGCTGAGAGGTTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGC 348
typeG ------------------------------------------------------------
Barley GCTGAGAGGTTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCA 349
Saccharum ------------------------------------------------------------
Cubansugarcane ------------------------------------------------------------
Sugarcanegreen ------------------------------------------------------------
Bermudagrass ------------------------------------------------------------
Deltocephalus ------------------------------------------------------------
Sorghum GCAGTAAGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAATGCCGTGTGCAACGAT 385
Mauritius_ GCAGTAAGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAATGCCGCGTG-AACGAT 272
Cynodon GCAGTAAGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAATGCCGTGTGCAACGAT 385
Stolbur GCAGTAAGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAATGCCGTGTGCAACGAT 385
typeE ------------------------------------------------------------
typeI ------------------------------------------------------------
typeH ------------------------------------------------------------
type ------------------------------------------------------------
typeC ------------------------------------------------------------
typeA ------------------------------------------------------------
group3 GCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTG-AACGAT 264
group4 GCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTG-AACGAC 267
Rice GCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTG-AACGAT 399
typeJ ------------------------------------------------------------
Brachiaria GCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTG-AACGAT 400
variantI GCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTG-AACGAT 399
variantII GCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTG-AACGAT 299
white GCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTG-AACGAT 400
typeB ------------------------------------------------------------
Maize AGCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGAT 408
typeG ------------------------------------------------------------
Barley GCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTG-AACGAT 408
Saccharum ------------------------------------------------------------
Cubansugarcane ------------------------------------------------------------
Sugarcanegreen ------------------------------------------------------------
Bermudagrass ------------------------------------------------------------
Deltocephalus ------------------------------------------------------------
Sorghum GAAGTATTTCGGTACGTAAAGTTCTTAAATTAGGGAAGTTTGGATGGTGGTTTGACCATT 445
Mauritius_ GAAGTATTTCGGTACGTAAAGTTCTTTTATTAGGGAAGAAAAGATGGTGGAAAAACCATT 332
Cynodon GAAGTATTTCGGTACGTAAAGTTCTTAAATTAGGGAAGTTTGGATGGTGGTTTGACCATT 445
Stolbur GAAGTATTTCGGTACGTAAAGTTCTTAAATTAGGGAAGTTTGGATGGTGGTTTGACCATT 445
typeE ------------------------------------------------------------
typeI ------------------------------------------------------------
typeH ------------------------------------------------------------
type ------------------------------------------------------------
typeC ------------------------------------------------------------
typeA ------------------------------------------------------------
group3 GAAGTATTTCGGTACGTAAAGTTCTTTTATTAGGGAAGAATAAATGATGGAAAAATCATT 324
group4 GAAGTACTTCGGTATGTAAAGTTCTTTTATTGAAGAAGAAACAATAGTGGAAAAACTATC 327
Rice GAAGTATTTCGGTATGTAAAGTTCTTTTATTGAAGAAAAAAAAATAGTGGAAAAACTATC 459
typeJ ------------------------------------------------------------
Brachiaria GAAGTATTTCGGTATGTAAAGTTCTTTTATTGGAGAAGAAAAAATAGTGGAAAAACTATC 460
variantI GAAGTATTTCGGTATGTAAAGTTCTTTTATTGAAGAAGAAAAAATAGTGGAAAAACTATC 459
variantII GAAGTATTTCGGTATGTAAAGTTCTTTTATTGAAGAAGAAAAAATAGTGGAAAAACTATC 359
white GAAGTATTTCGGTATGTAAAGTTCTTTTATTGAAGAAGAAAAAATAGTGGAAAAACTATC 460
typeB ------------------------------------------------------------
Maize GAAGTATTTCGGTACGTAAAGTTCTTTTATTAGGGAAGAATAAATGATGGAAAAATCATT 468
typeG ------------------------------------------------------------
Barley GAAGTATTTCGGTACGTAAAGTTCTTTTATTAGGGAAGAATAAATGATGGAAAAATCATT 468
Saccharum ------------------------------------------------------------
Cubansugarcane ------------------------------------------------------------
Sugarcanegreen ------------------------------------------------------------
Bermudagrass ------------------------------------------------------------
Deltocephalus ------------------------------------------------------------
Sorghum ATGACGGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGGGGCGGTAATACAT 505
Mauritius_ ATGACGGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACAT 392
Cynodon ATGACGGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGGGGCGGTAATACAT 505
Stolbur ATGACGGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGGGGCGGTAATACAT 505
typeE ------------------------------------------------------------
typeI ------------------------------------------------------------
typeH ------------------------------------------------------------
type ------------------------------------------------------------
typeC ------------------------------------------------------------
typeA ------------------------------------------------------------
group3 CTGACGGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACAT 384
group4 TTGACGTTATTCAATGAATAAGCCCCGGCTAACTATGTGCTAGCAGCCGCGGTAATACAT 387
Rice TTGACGCTATTCAATGAATAAGCCCCGGCAAACTATGTGCCAGCAGCCGCGGTAATACAT 519
typeJ ------------------------------------------------------------
Brachiaria TTGACGATATTCAATGAATAAGCCCCGGCAAACTATGTGCCAGCAGCCGCGGTAATACAT 520
variantI TTGACGCTATTCAATGAATAAGCCCCGGCAAACTATGTGCCAGCAGCCGCGGTAATACAT 519
variantII TTGACGCTATTCAATGAATAAGCCCCGGCAAACTATGTGCCAGCAGCCGCGGTAATACAT 419
white TTGACGATATTCAATGAATAAGCCCCGGCAAACTATGTGCCAGCAGCCGCGGTAATACAT 520
typeB ------------------------------------------------------------
Maize CTGACGGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACAT 528
typeG ------------------------------------------------------------
Barley CTGACGGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACAT 528
Saccharum ------------------------------------------------------------
Cubansugarcane ------------------------------------------------------------
Sugarcanegreen ------------------------------------------------------------
Bermudagrass ------------------------------------------------------------
Deltocephalus ------------------------------------------------------------
Sorghum AGGGGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGT 565
Mauritius_ AGGGGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGT 452
Cynodon AGGGGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGT 565
Stolbur AGGGGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGT 565
typeE ------------------------------------------------------------
typeI ------------------------------------------------------------
typeH ------------------------------------------------------------
type ------------------------------------------------------------
typeC ------------------------------------------------------------
typeA ------------------------------------------------------------
group3 AGGGGGCGAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTTAATAAGT 444
group4 AGGGGGCGAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTTAATAAGT 447
Rice AGGGGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTTGATAAGT 579
typeJ ------------------------------------------------------------
Brachiaria AGGGGGCGAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTTGGTAAGT 580
variantI AGGGGGCGAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTTAATAAGT 579
variantII AGGGGGCGAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTTAATAAGT 479
white AGGGGGCGAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTTAATAAGT 580
typeB ------------------------------------------------------------
Maize AGGGGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGT 588
typeG ------------------------------------------------------------
Barley AGGGGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGT 588
Saccharum ------------------------------------------------------------
Cubansugarcane ------------------------------------------------------------
Sugarcanegreen ------------------------------------------------------------
Bermudagrass -CAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTAGGTTAACTCCTAAAAC 59
Deltocephalus ------------------------------------------------------------
Sorghum TTATGGTCTAAGTGCAACGCTCAACGTTGTGATGCTATAAAAACTGTTTAGCTAGAGTTG 625
Mauritius_ TTATGGTCTAAGTGCAACGCTCAACGTTGTGATGCTATAAAAACTGTTTAGCTAGAGTTG 512
Cynodon TTATGGTCTAAGTGCAACGCTCAACGTTGTGATGCTATAAAAACTGTTTAGCTAGAGTTG 625
Stolbur TTATGGTCTAAGTGCAACGCTCAACGTTGTGATGCTATAAAAACTGTTTAGCTAGAGTTG 625
typeE ------------------------------------------------------------
typeI ------------------------------------------------------------
typeH -------------------TTAACGGTTGTCCGGCTATTGAAACTGTTAAACCTTGAGTT 41
type ------------------------------------------------------------
typeC ------------------------------------------------------------
typeA ------------------------------------------------------------
group3 CTCTAGTTTAATTTCAACGCTTAACGTTGTCCTGCTAGAGAAACTGTTTAACTAGAGTGA 504
group4 CTCTAGTTTAATTTCAACGCTTAACGTTGTCCTGCTAGAGAAACTGTTTAACTAGAGTGA 507
Rice CTATAGTTTAATTTCAGTGCTTAACACTGTCCTGCTATAGAAACTATCAGACTAGAGTGA 639
typeJ ------------------------------------------------------------
Brachiaria CTATAGTTTAATTTCAGTGCTTAACACTGTTCTGCTATAGAAACTATCAGACTAGAGTGA 640
variantI CTATAGTTTAATTTCAGTGCTTAACACTGTCCTGCTATAGAAACTATTAAACTAGAGTGA 639
variantII CTATAGTTTAATTTCAGTGCTTAACACTGTCCTGCTATAGAAACTATTAAACTAGAGTGA 539
white CTATAGTTTAATTTCAGTGCTTAACACTGTCCTGCTATAGAAACTATTAGACTAGAGTGA 640
typeB ------------------------------------------------------------
Maize TTATGGTCTAAGTGCAATGCTCAACATTGTGATGCTATAAAAACTGTTTAGCTAGAGTAA 648
typeG ------------------------------------------------------------
Barley TTATGGTCTAAGTGCAATGCTCAACATTGTGATGCTATAAAAACTGTTTAGCTAGAGTAA 648
Saccharum ------------------------------------------------------------
Cubansugarcane ------------------------------------------------------------
Sugarcanegreen ------------------------------------------------------------
Bermudagrass GAGCGCAACCCTTGTCACTAGTTGCCAGCATGTTATGATGGGCACTTTAGTGAGACTGCC 119
Deltocephalus ------------------------------------------------------------
Sorghum GATAGAGGCAAGTGGAATTCCGTGTGTAGTGGTAAAATGCGTAAATATACGGAGGAACAC 685
Mauritius_ GATAGAGGCAAGTGGAATTCCGTGTGTAGTGGTAAAATGCGTAAATATACGGAGGAACAC 572
Cynodon GATAGAGGCAAGTGGAATTCCGTGTGTAGTGGTAAAATGCGTAAATATACGGAGGAACAC 685
Stolbur GATAGAGGCAAGTGGAATTCCGTGTGTAGTGGTAAAATGCGTAAATATACGGAGGAACAC 685
typeE ------------------------------------------------------------
typeI ------------------------------------------------------------
typeH AGATAGAGGCGAGTGGAATTCCATGTGTAGCGGTAAAATGCGTAAATATATGGAGGAACC 101
type ------------------------------------------------------------
typeC ------------------------------------------------------------
typeA ------------------------------------------------------------
group3 GATAGAGGTAAGCGGAATTCCATGTGTAGCGGTAAAATGTGTAAATATATGGAGGAACAC 564
group4 GATAGAGGTAAGCGGAATTCCATGTGTAGCGGTAAAATGTGTAAATATATGGAGGAACAC 567
Rice GATAGAGGCAAGTGGAATTCCATGTGTAGCGGTAAAATGCGTAAATATATGGAGGAACAC 699
typeJ ------------------------------------------------------------
Brachiaria GATAGAGGCAAGTGGAATTCCATGTGTAGCGGTAAAATGCGTAAATATATGGAGGAACAC 700
variantI GATAGAGGCAAGTGGAATTCCATGTGTAGCGGTAAAATGCGTAAATATATGGAGGAACAC 699
variantII GATAGAGGCAAGTGGAATTCCATGTGTAGCGGTAAAATGCGTAAATATA-GGAGGAACAC 598
white GATAGAGGCAAGTGGAATTCCATGTGTAGCGGTAAAATGCGTAAATATATGGAGGAACAC 700
typeB ------------------------------------------------------------
Maize GATAGAGGCAAGTGGAATTCCATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACAC 708
typeG ------------------------------------------------------------
Barley GATAGAGGCAAGTGGAATTCCATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACAC 708
Saccharum ------------------------------------------------------------
Cubansugarcane ------------------------------------------------------------
Sugarcanegreen ------------------------------------------------------------
Bermudagrass AATGAAAAATTGGAGGAAGGTGAGGATCACGTCAAATCATCATGCCCCTTATGATCTGGG 179
Deltocephalus ------------------------------------------------------------
Sorghum CAGAAGCGAAGGCGGCTTGCTGGGTCTTAACTGACGCTGAGGCACGAAAGCGTGGGGAGC 745
Mauritius_ CAGAAGCGAAAGCGGCTTGCTGGGTCTTAACTGACGCTGAGGCACGAAAGCGTGGGGAGC 632
Cynodon CAGAAGCGAAGGCGGCTTGCTGGGTCTTAACTGACGCTGAGGCACGAAAGCGTGGGGAGC 745
Stolbur CAGAAGCGAAGGCGGCTTGCTGGGTCTTAACTGACGCTGAGGCACGAAAGCGTGGGGAGC 745
typeE ------------------------------------CTGAGGCACGAAAGCGTGGGGAGC 24
typeI -----------------------------------------GCACGAAAGCGTGGGGAGC 19
typeH CCAGAGGCGTAGCGGCTCGCTGGGTCTTAACTGACGCTGAGGCACGAAAGCGTGGGGAGC 161
type CCAGAGGCGTAGCGGCTCGCTGGGTCTTAACTGACGCTGAGGCACGAAAGCGTGGGGAGC 60
typeC ----------------------------------CGCTGAGCACCGAAAGCGTGGGGAGC 26
typeA ----------------------------------------------AAAGCGTGGGGAGC 14
group3 CAGAGGCGTAGGCGGCTTACTGGGTCTTTACTGACGCTGATGCACGAAAGCGTGGGGAGC 624
group4 CAGAGGCGTAGGCGGCTTACTGGGTCTTTACTGACGCTGATGCACGAAAGCGTGGGGAGC 627
Rice CAGAGGCGTAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGC 759
typeJ ------------------------------------CTGAGGCACGAAAGCGTGGGTAGC 24
Brachiaria CAGAGGCGTAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGC 760
variantI CAGAGGCGTAGGCGGCTTGCTGGGTCTTTAATGACGCTGAGGCACGAAAGCGTGGGGAGC 759
variantII CAGAGGCGTAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGC 658
white CAGAGGCGTAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGC 760
typeB ------------------------------------------------------------
Maize CAGTAGCGAAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGC 768
typeG ------------------------------------------------------------
Barley CAGTAGCGAAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGC 768
Saccharum ------------------------------------------------------------
Cubansugarcane ------------------------------------------------------------
Sugarcanegreen ------------------------------------------------------------
Bermudagrass CTACAAACGTGATACAATGGCTGTTACAAAGAGTAGCTAAAACGCGAGTTTATAGCCAAT 239
Deltocephalus ------------------------------------------------------------
Sorghum AAACAGGATTAGATACCCTNGTAGTCCACGCCCTAAACGATGAGTACTAAACGTTGGAT- 804
Mauritius_ AAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATGAGTACTAAACGTTGGAT- 691
Cynodon AAACAGGATTAGATACCCTNGTAGTCCACGCCCTAAACGATGAGTACTAAACGTTGGAT- 804
Stolbur AAACAGGATTAGATACCCTNGTAGTCCACGCCCTAAACGATGAGTACTAAACGTTGGAT- 804
typeE AAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAGTGTCGGGTT 84
typeI AAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAGTGTCGGGTT 79
typeH AAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAGTGTCGGGTT 221
type AAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAGTGTCGGGTT 120
typeC AAACAG-ATTAGATACCCTGGTAGTCC-CGCCGTAAACGATGAGTATTAAGTGTCGGGTT 84
typeA AAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAGTGTCGGGTT 74
group3 AAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACTATGAGTACTAAGTGTCGGGGT 684
group4 AAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACTATGAGTACTAAGTGTCGGGGT 687
Rice AAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAGTGTCGGGG- 818
typeJ AAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAGTGTCGGGAT 84
Brachiaria AAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAGTGTCGGGG- 819
variantI AAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAGTGTCGGGGT 819
variantII AAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAGTGTCGGGGT 718
white AAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAGTGTCGGGAT 820
typeB ------------------------------------------------------------
Maize AAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAACGTTGGGT- 827
typeG -------------------GGTAGTCCACGCCGTAAACGATGAGTACTAAACGTTGGGT- 40
Barley AAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAACGTTGGGT- 827
Saccharum ------------------------------------------------------TTGAAA 6
Cubansugarcane ------------------------------------------------------------
Sugarcanegreen -----------------------------------------------------TGGGAAT 7
Bermudagrass CTCATAAAAGCAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAAT 299
Deltocephalus ------------------------------------------------------------
Sorghum -AAAACCAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTAC-GTACGCAAGT 862
Mauritius_ -AAAACCAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTAC-GTACGCAAGT 749
Cynodon -AAAACCAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTAC-GTACGCAAGT 862
Stolbur -AAAACCAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTAC-GTACGCAAGT 862
typeE -AAACCCGGTACTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACCGTACGCAAGT 143
typeI -AAACC-GGTACTGAAGTTAACACATTAAGTACTCCGCCT-AGTAGTAC-GTACGCAAGT 135
typeH -AAACC-GGTACTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTAC-GTACGCAAGT 278
type -AAACC-GGTACTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTAC-GTACGCAAGT 177
typeC -AACCCCGGTACTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTAC-GTACGCAAGT 142
typeA -AAACC-GGTACTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACCGTACGCAAGT 132
group3 TAAACTCGGTACTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTAC-GTACGCAGGT 743
group4 TAAACTCGGTACTGAAGTTAACACATTAAGTACTCCGCCTGAGTAATAC-GTACGCAAGT 746
Rice -GAACTCGGTACTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTAC-GTACGCAAGT 876
typeJ AAAACTCGGTACTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTAC-GTACGCAAGT 143
Brachiaria -AAACTCGGTACTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTAC-GTACGCAAGT 877
variantI --TACTCGGTACTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTAC-GTACGCAAGT 876
variantII --TACTCGGTACTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTAC-GTACGCAAGT 775
white --TACTCGGTACTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTAC-GTACGCAAGT 877
typeB ------------------------------------------------------------
Maize -AAAACCAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTAC-GTACGCAAGT 885
typeG -AAAACCAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTAC-GTACGCAAGT 98
Barley -AAAACCAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTAC-GTACGCAAGT 885
Saccharum ATCTCTTAAACTCGTGGTGCTCATTGCACGGGTTCACTCTCGCTGGGTTTGTACGCCCCG 66
Cubansugarcane ------------------------------------------------------------
Sugarcanegreen CGCTAGTAATCGCGAATCAGCATTTCGCGGTGAATACGTTCTCGGGGTTTGTACCCCCCG 67
Bermudagrass CGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTTCTCGGGGTTTGTACACACCG 359
Deltocephalus ------------------------------------------------------------
Sorghum ATGAAA--CTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATT 920
Mauritius_ ATGAAA--CTTAAAGGGATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATT 807
Cynodon ATGAAA--CTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATT 920
Stolbur ATGAAA--CTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATT 920
typeE ATGAAA--CTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATT 201
typeI ATGAAA--CTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATTTTGTTTAATT 193
typeH ATGAAA--CTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATT 336
type ATGAAA--CTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATT 235
typeC ATGAAAA-CTTAAAGGAATTAACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATT 201
typeA ATGAAA--CTTAAAGGAATTGACGGGACTCCGCACAACCGGTGGATCATGTTGTTTAATT 190
group3 ATGAAA--CTTAAAGGAATTGACGGGACCCCGCACAAGCGGTGGATCATGTTGTTTAATT 801
group4 ATGAAA--CTTAAAGGAATTGACGGGATCCCGCACAAGCGGTGGATCATGTTGTTTAATT 804
Rice ATGAAA--CTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATT 934
typeJ ATGAAA--CTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATT 201
Brachiaria ATGAAA--CTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATT 935
variantI ATGAAA--CTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATT 934
variantII ATGAAA--CTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATT 833
white ATGAAA--CTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATT 935
typeB ------------------------------------------------------------
Maize ATGAAA--CTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATT 943
typeG ATGAAA--CTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATT 156
Barley ATGAAA--CTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATT 943
Saccharum ACCGTCGACGCACGAAAGTTGGTAATACTCAAAAACGGTAGCCTAACTTCTTCGGAAGAG 126
Cubansugarcane ------------------------------------------------------------
Sugarcanegreen CCCGTCAAACCACGAAAGTTGGTAATACTCAAAAACGGTAGCCTAACTTCTTCGGAAGAG 127
Bermudagrass CCCGTCAAACCACGAAAGTTGGTAATACTCGAAAACGGTAGCCTAACTTCTTCGGAAGAG 419
Deltocephalus ------------------------------------------------------------
Sorghum CGAAGGTACCCGAAAAACCTT----CACCAGGTCTTGACATGCTTTTGCAAAGCTGTAGA 976
Mauritius_ CGAAGGTACCCGAAAAACCT-----CACCAGGTCTTGACATGCTTTTGCAAAGCTGTAGA 862
Cynodon CGAAGGTACCCGAAAAACCTT----CACCAGGTCTTGACATGCTTTTGCAAAGCTGTAGA 976
Stolbur CGAAGGTACCCGAAAAACCTT----CACCAGGTCTTGACATGCTTTTGCAAAGCTGTAGA 976
typeE CGAAGATACCCGAAAAACCT-----TACCAGGTCTTGACATGTTTTTGCAAAATGATAGT 256
typeI CGAAGATACCCGAAAAACCT-----TACCAGGTCTTGACATGTTTTTGCAAAATGATAGT 248
typeH CGAAGATACCCGAAAAACCT-----TACCAGGTCTTGACATGTTTTTGCAAAATGATAGT 391
type CGAAGATACCCGAAAAACCT-----TACCAGGTCTTGACATGTTTTTGCAAAATGATAGT 290
typeC CGAAGATACCCGAAAAAC-T-----TACCAGGTCTTGACATGTTTTTGCAAAATGATAGT 255
typeA CGAAGATACCCGAAAAACCT-----TACCAGGTCTTGACATGTTTTTGCGAAACGGTAGT 245
group3 CGAAGATACACGAAAAACCT-----TACCAGGTCTTGACATACTCT-GCAAAGCTATAGA 855
group4 CGAAGATACACGAAAAACCT-----TACCAGGTCTTGACATACTCT-GCAAAGCTATAGA 858
Rice CGAAGATACACGAAAAACCT-----TACCAGGTCTTGACATACTCT-GCAAAGCTATAGC 988
typeJ -GAAGATACACGAAAA-CCT-----TACCAGGTCTTGACATACTCT-GCAAAGCTATAGA 253
Brachiaria CGAAGATACACGAAAAACCT-----TACCAGGTCTTGACATACTCT-GCAAAGCTATAGC 989
variantI CGAAGATACACGAAAAACCT-----TACCAGGTCTTGACATACTCT-GCAAAGCTATAGC 988
variantII CGAAGATACACGAAAAACCT-----TACCAGGTCTTGACATACTCT-GCAAAGCTATAGC 887
white CGAAGATACACGAAAAACCT-----TACCAGGTCTTGACATACTCT-GCAAAGCTATAGC 989
typeB ------------AAAAACCT-----TACCAGGTCTTGACAAACTTTTGCAAAG-TATAGA 42
Maize CGAAGGTACCCGAAAAACCT-----CACCAGGTCTTGACATGCTTCTGCAAAGCTGTAGA 998
typeG CGAAGGTACCCGAAAAACCT-----CACCAGGTCTTGACATGCTTCTGCAAAGCTGTAGA 211
Barley CGAAGGTACCCGAAAAACCT-----CACCAGGTCTTGACATGCTTCTGCAAAGCTGTAGA 998
Saccharum GGAACCGTCTAAGGTAGGATCGATGATTGGGGTTAAGTCGTAACAAGGTATCCCTACCGG 186
Cubansugarcane ------------------------------------------------------------
Sugarcanegreen GGAACCGTCTAAGGTAGGATCGATGATTGGGGTTAAGTCGTAACAAGGTATCCCTACCGG 187
Bermudagrass GGAACCGTCTAAGGTAGGATCGATGATTGGGGTTAAGTCGTAACAAGGTATCCCTACCGG 479
Deltocephalus ------------------------------------------------------------
Sorghum AATACAGTGGAGG-TTATCAGAAGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGT 1035
Mauritius_ AATACAGTGGAGG-TTATCAGAAGCACAGGTGGTGCATGGTTGTCGTCAGCACGTGTCGT 921
Cynodon AATACAGTGGAGG-TTATCAGAAGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGT 1035
Stolbur AATACAGTGGAGG-TTATCAGAAGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGT 1035
typeE AATATCGTGGAGG-TTACCAGAAACACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGT 315
typeI AATATCGTGGAGG-TTACCAGAAACACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGT 307
typeH AATATCGTGGAGG-TTACCAGAAACACAGGTGGTGCATGGTTGTCGTCAGTTCGTGTCGT 450
type AATATCGTGGAGG-TTACCAGAAACACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGT 349
typeC A-TATCGTGGAGG-TTACCAGAAACACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGT 313
typeA AATATCGTGGAGG-TTATCAGAAACACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGT 304
group3 AATATAGTGGAGG-TTATCAGGGATACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGT 914
group4 AATATAGTGGAGG-TTATCAGGGATACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGT 917
Rice AATATAGTGGAGG-TTATCAGGGATACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGT 1047
typeJ AATATAGTGGAGG-TTATCAGGGATACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGT 312
Brachiaria AATATAGCGGAGG-TTATCAGGGATACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGT 1048
variantI AATATAGTGGAGG-TTATCAGGGATACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGT 1047
variantII AATATAGTGGAGG-TTATCAGGGATACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGT 946
white AATATAGTGGAGG-TTATCAGGGATACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGT 1048
typeB AATATAGTGGAGGGTTATCAGGGATACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGT 102
Maize AACACAGTGGAGG-TTATCAGTTGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGT 1057
typeG AACACAGTGGAGG-TTATCAGTTGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGT 270
Barley AACACAGTGGAGG-TTATCAGTTGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGT 1057
Saccharum AAGGTGGGGATGGATCACCTCCTTTCTAAGGAATA----ATT-TTTTAAATATTCATCTT 241
Cubansugarcane -----CTAGTGGGACCGCCCCCACCCCGCGG----------T-TTTCCAATGC-CACTAG 43
Sugarcanegreen AAGGTGGGGATGGATCACCTCCTTTCTAAGGAATA----ATT-TTTTAAATATTCATCTT 242
Bermudagrass AAGGTGGGGATGGATCACCTCCTTTCTAAGGAAAAGAAAATT-TTTTAAATTTTCATCTT 538
Deltocephalus ---------------------AGTATCGCGATAGAA-----T-GCGCGGTGATACGTCCG 33
* *
Sorghum GAGATGTTG--GGTTAAGTCCCGCAACGA---GCGC-AACCCTTGTTGTTAA--TTGCCA 1087
Mauritius_ GAGATGTTG--GGTTAAGTCCCGCAACGA---GCGC-AACCCTTGTTGTTAA--TTGCCA 973
Cynodon GAGATGTTG--GGTTAAGTCCCGCAACGA---GCGC-AACCCTTGTTGTTAA--TTGCCA 1087
Stolbur GAGATGTTG--GGTTAAGTCCCGCAACGA---GCGC-AACCCTTGTTGTTAA--TTGCCA 1087
typeE GAGATGTTA--GGTTAAGTCCTAAAACGA---GCGA-AACCCTTATCGTTAG--TTGCCA 367
typeI GAGATGTTA--GGTTAAGTCCTAAAACGA---GCGA-AACCCTTATCGTTAG--TTGCCA 359
typeH GAGATGTTA--GGTTAAGTCCTAAAACGA---GCGA-AACCCTCATCGTTAGG-TTGCCA 503
type GAGATGTTA--GGTTAAGTCCTAAAACGA---GCGA-AACCCTTATCGTTAG--TTGCCA 401
typeC GAGATGTTAA-GGCTAAGTCCTAAAACGAA--GCGA-AACCCTTATCGTTAG--TTGCCA 367
typeA GAGATGTTA--GGTTAAGTCCTAAAACGA---GCGA-AACCCTTATCGTTAG--TTGCCA 356
group3 GAGATGTTA--GGTTAAGTTCTAAAACGA---GCGC-AACCCCTGTCGTTAA--TTGCCA 966
group4 GAGATGTTA--GGTTAAGTTCTAAAACGA---GCGC-AACCCCTGTCGTTAA--TTGCCA 969
Rice GAGATGTTA--GGTTAAGTCCTAAAACGA---GCGC-AACCCTTGTCATTAG--TTGCCA 1099
typeJ GAGATGTTA--GGTTAAGTTCTAAAACGA---GCGC-AACCCTTGTCGTTAG--TTACCA 364
Brachiaria GAGATGTTA--GGTTAAGTCCTAAAACGA---GCGC-AACCCTTGTCACTAG--TTGCCA 1100
variantI GAGATGTTA--GGTTAAGTCCTAAAACGA---GCGC-AACCCTTGTCACTAG--TTGCCA 1099
variantII GAGATGTTA--GGTTAAGTCCTAAAACGA---GCGC-AACCCTTGTCACTAG--TTGCCA 998
white GAGATGTTA--GGTTAAGTCCTAAAACGA---GCGC-AACCCTTGTCATTAG--TTGCCA 1100
typeB GAAATGTTA--GGTTAAGTCCTAAAACGA---GCGCCAACCCTTGTCGTTAG--TTACCA 155
Maize GAGATGTTG--GGTTAAGTCCCGCAACGA---GCGC-AACCCTTATTGTTAG--TTACCA 1109
typeG GAGATGTTG--GGTTAAGTCCCGCAACGA---GCGC-AACCCTTATTGTTAG--TTACCA 322
Barley GAGATGTTG--GGTTAAGTCCCGCAACGA---GCGC-AACCCTTATTGTTAG--TTACCA 1109
Saccharum CAGTTTTGAAAGACTTAGTTCTTATAAGT-------TTTTCTTTTTTAAGGAAAAGAAAA 294
Cubansugarcane GGCCTTTTATTG---TAGTTGCAACCCGT-------TAATCTTTTT-------AAGATTA 86
Sugarcanegreen CAGTTTTGAAAGACTTAGTTCTTATAAGT-------TTTTCTTTTTTAAGGAAAAGAAAA 295
Bermudagrass CAGTTTTGAAAGACTTAGTTCTAATAAGTAGTAAGTTTTTCTCTTTTAAG--AAAAAGGA 596
Deltocephalus GGGTTTGTACA----CACGCCCGGCAGAAACGAAAGTTGGAATACTC-------AAAAAC 82
* * *
Sorghum T---CATTAAGTTGGGGACTTTAGCAAGACTGCCAATGATAAATTGGAGGAAGGTGGGGA 1144
Mauritius_ T---CATTAAGTTGGGGACTTTAGCAAGACTGCCAATGATAAATTGGAGGAAGGTGGGGA 1030
Cynodon T---CATTAAGTTGGGGACTTTAGCAAGACTGCCAATGATAAATTGGAGGAAGGTGGGGA 1144
Stolbur T---CATTAAGTTGGGGACTTTAGCAAGACTGCCAATGATAAATTGGAGGAAGGTGGGGA 1144
typeE G-CACGTTATGGTGGGGACTTTAACGAGACTGCCAATGATAAATTGGAGGAAGGTGAGGA 426
typeI G-CACGTTACGGTGGGGACTTTAACGAGACTGCCAATGATAAATTGGAGGAAGGTGAGGA 418
typeH G-CACGTTATGGTGGGGACTTTAACGAGACTGCCAATGATAAATTGGAGGAAGGTGAGGA 562
type G-CACGTTATGGTGGGGACTTTAACGAGACTGCCAATGATAA-TTGGAGGAAGGTGAGGA 459
typeC GGCACGTTATGGTGGGGACTTTAACGAGACTGCCAATGATAAATTGGAGGAAGGTGAGGA 427
typeA G-CACGTTATGGTGGGGACTTTAACGAGACTGCCAGTGATAAACTGGAGGAAGGTGAGGA 415
group3 G-CACGTTATGGTGGGGACTTTAGCGAGACTGCCAATGAAAAATTGGAGGAAGGTGGGGA 1025
group4 G-CACGTTATGGTGGGGACTTTAGCGAGACTGCCAATGAAAAATTGGAGAAAGGTGGGGA 1028
Rice G-CATGTTATGATGGGCACTTTAATGAGACTGCCAATAAAAAATTGGAGGAAGGTGAGGA 1158
typeJ G-CACGTTATGGTGGGGACTTTAGCGAGACCGCCAATTAAAAATTGGGGGAAGGTGAGGA 423
Brachiaria G-CATGTTATGATGGGCACTTTAGTGAGACTGCCAATGAAAAATTGGAGGAAGGTGAGGA 1159
variantI G-CATGTTATGATGGGCACTTTAGTGAGACTGCCAATGAAAAATTGGAGGAAGGTGAGGA 1158
variantII G-CATGTTATGATGGGCACTTTAGTGAGACTGCCAATGAAAAATTGGAGGAAGGTGAGGA 1057
white G-CATGTCATGATGGGCACTTTAATGAGACTGCCAATGAAAAATTGGAGGAAGGTGAGGA 1159
typeB G-CACGTTATGGTGGGGACTTTAGCGAGACTGCCAATTAAAAATTGGAGGAAGGTGAGGA 214
Maize G-CACGTAATGGTGGGGACTTTAGCAAGACTGCCAGTGATAAATTGGAGGAAGGTGGGGA 1168
typeG G-CACGTAATGGTGGGGACTTTAGCAAGACTGCCAGTGATAAATTGGAGGAAGGTGGGGA 381
Barley G-CACGTAATGGTGGGGACTTTAGCAAGACTGCCAGTGATAAATTGGAGGAAGGTGGGGA 1168
Saccharum TGGGCCTATAGCTCAGTTGGTTAGAGCACACGCC--TGATAAGCGTGAGGTCGAT--GGT 350
Cubansugarcane AGGGCCTATAGCTCAGTTGGTTAGAGCACACGCC--TGATAAGCGTGAGGTCGGT--GGT 142
Sugarcanegreen TGGGCCTATAGCTCAGTTGGTTAGAGCACACGCC--TGATAAGCGTGAGGTCGAT--GGT 351
Bermudagrass AGGGCCTATAGCTCAGTTGGTTAGAGCACACGCC--TGATAAGCGTGAGGTCGAT--GGT 652
Deltocephalus GGAGCCTA--ACTTCTTCGGAAGAGGGAACCGTC--TAGGGGAGGATCGATGATT--GGG 136
* * * * * * * **
Sorghum CGACGTCAAATCATCATGCCCC---TTATGACCTGGG------CTACAAACGTGATACAA 1195
Mauritius_ CGACGTCAAATCATCATGCCCC---TTATGACCTGGG------CTACAAACGTGATACAA 1081
Cynodon CGACGTCAAATCATCATGCCCC---TTATGACCTGGG------CTACAAACGTGATACAA 1195
Stolbur CGACGTCAAATCATCATGCCCC---TTATGACCTGGG------CTACAAACGTGATACAA 1195
typeE TCACGTCAAATCAGCATGCCCC---TTATGACCTGGG------CTACAAACGTGATACAA 477
typeI TCACGTCGAATCAGCATGCCCC---TTATGACCTGGG------CTACAAACGTGATACAA 469
typeH TCACGTCAAATCAGCATGCCCC---TTATGACCTGGG------CTACAAACGTGATACAA 613
type TCACGTCAAATCAGCATGCCCC---TTATGACCTGGG------CTACAAACGTAA-ACAA 509
typeC TCACGTCAAATCAGCATGCCCC---TTATGACCTGGGG-----CTACAAACATGATACAA 479
typeA TCACGTCAAATCAGCATGCCCC---TTATGACCTGGG------CTACAAACGTGATACAA 466
group3 TTACGTCAAATCATCATGCCCC---TTATGATCTGGG------CTACAAACGTGATACAA 1076
group4 TTACGTCAAATCATCATGCCCC---TTATGATCTGGG------CTACAAACGTGATACAA 1079
Rice TCACGTCAAATCATCATGCCCC---TTATGATCTGGG------CTACAAACGTGATACAA 1209
typeJ TTACGTCAAGTCATCATGCCCC---TTATGATCTGGG------CTACAAACGTGA-ACAA 473
Brachiaria TCACGTCAAATCATCATGCCCC---TTATGATCTGGG------CTACAAACGTGATACAA 1210
variantI TCACGTCAAATCATCATGCCCC---TTATGATCTGGG------CTACAAACGTGATACAA 1209
variantII TCACGTCAAATCATCATGCCCC---TTATGATCTGGG------CTACAAACGTGATACAA 1108
white TCACGTCAAATCATCATGCCCC---TTATGATCTGGG------CTACAAACGTGATACAA 1210
typeB TTACGTCAAATCATCATGCCCC--CTTATGATCTGGG------CTACAAACGTGATACAA 266
Maize CGACGTCAAATCATCATGCCCC---TTATGACCTGGG------CTACAAACGTGATACAA 1219
typeG CAACGTCAAATCATCATGCCCC---TTATGACCTGGG------CTACAGACGTGATACAA 432
Barley CGACGTCAAATCATCATGCCCC---TTATGACCTGGG------CTACAAACGTGATACAA 1219
Saccharum TCAAGTCCATTTAGGCCCACCA-ACTGA-AAAAAAGGTCTTTTTTCTAATTCTTAAAAAA 408
Cubansugarcane TCAAGTCCATTTAGGCCCACCATAACCA-CAAATAGG--------CTAAATCTTAAAAAA 193
Sugarcanegreen TCAAGTCCATTTAGGCCCACCA-ACTGA-AAAAAAGGTCTTTTTTCTAATTCTAA----- 404
Bermudagrass TCAAGTCCATTTAGGCCCACCA-ACTGATCAATAAGGTCATCTTTCTAATTCTTAAAAAA 711
Deltocephalus GTTAATCGAACAAGGTATCCCT-ACCGGAGGTGGGGATGGATCACCTTCTTTTAAGA--- 192
** * * ** * * *
Sorghum TGGCTGTTACAAAGGGTAGCTAAAGCGTAAGCTTCTGGCGAATCTCAAAAAAGCAGTCTC 1255
Mauritius_ TGGCTGTTACAAAGGGTAGCTAAAGCGTAAGCTTCTGGTGAATCTCAAAAAAGCAGTCTC 1141
Cynodon TGGCTGTTACAAAGGGTAGCTAAAGCGTAAGCTTCTGGCGAATCTCAAAAAAGCAGTCTC 1255
Stolbur TGGCTGTTACAAAGGGTAGCTAAAGCGTAAGCTTCTGGCGAATCTCAAAAAAGCAGTCTC 1255
typeE TGGCTGTTACAAAGGGTAGCTGAAACGCAAGTTCTTGGCCCAATCCCCAAAAACAGTCCC 537
typeI TGGCTGTTACAAAGGGTAGCTGAAACGCAAGTTTTTGGCC-AATCCCCAAAAACAGTCCC 528
typeH TGGCTGTTA--AAGGGTAGCTGAAACGCAAGTTCTTGGCC-AATCCCCAAAAACAGTCCC 670
type TGGCTGTTACAAAGGGTAGCTGAAACGCAAGTTCTTGGCC-AATCCCCAAAAACAGTCCC 568
typeC TGGCTGTTAAAAAGGGTAGCTGAAACGCAAGTTCTTGGCC-AATCCCCAAAAACAGTCCC 538
typeA TGGCTGTTACAAAGGGTAGCTGAAACGTAAGTTCTTGGCC-AATCCCCAAAAACAGTCTC 525
group3 TGGCTATTACAAAGAGTAGCTGAAACGCGAGTTTTTGGCAAATCTCAAAAAAATAGTCTC 1136
group4 TGGCTATTACAAAGAGTAGCTGAAACGCGAGTTTTTGTCAAATCTCAAAAAAATAGTCTC 1139
Rice TGGCTGTTACAAAGAGTAGCTGAAACGTAAGTTCAAGCCAA-TCTCAAAAAAACAGTCTC 1268
typeJ TGGCTGGTACAAAGAGTCGCTTAAACGT-AGTTTTTGGCTAATCTCAAAAAAGCAGTCTC 532
Brachiaria TGGCTGTTACAAAGAGTAGCTAAAACGCGAGTTTATAGCCAATCTCATAAAAGCAGTCTC 1270
variantI TGGCTGTTACAAAGAGTAGCTGAAACGCAAGTTCATAGCCAATCTCATAAAAGCAGTCTC 1269
variantII TGGCTGTTACAAAGAGTAGCTGAAACGCAAGTTCATAGCCAATCTCATAAAAGCAGTCTC 1168
white TGGCTGTTACAAAGAGTAGCTGAAACGCAAGTTTATAGCCAATCTCATAAAAGCAGTCTC 1270
typeB TGGCTGTTACAAAGAGTCGCTGAAACGTGAGTTTTTGGCTAATCTCAAAAAAGCAGTCTC 326
Maize TGGCTGTTACAAAGGGTAGCTGAAGCGCAAGTTTTTGGCGAATCTCAAAAAAACAGTCTC 1279
typeG TGGCTGTTACGGAGGGTAGCTGAAGCGCAAGTTTTTGGCGGATCTCAAAAAAACAGTCTC 492
Barley TGGCTGTTACAAAGGGTAGCTGAAGCGCAAGTTTTTGGCGAATCTCAAAAAAACAGTCTC 1279
Saccharum AAAGTTCTTTGAAAAGTAGATAAACAAAGTATTTTTTTAAAAATCAAAGGAATCAAGGGC 468
Cubansugarcane G----CTCTTGAAAAGTAGATAAACGAAGA------TAAAAAATCAAAGAA--------- 234
Sugarcanegreen ------------------------------------------------------------
Bermudagrass A--GTTCTTTGAAAAGTAGATAAACAAAGTAAAATAATAGAAATCAAAGGAATTAAGGGC 769
Deltocephalus ------------------------------------------------------------
Sorghum AGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAAT 1315
Mauritius_ AGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAAT 1201
Cynodon AGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAAT 1315
Stolbur AGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAAT 1315
typeE AGTCCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAAT 597
typeI AGTCCGGATTGAAGTCTGCAACTCGACCTCATGAAGTTGGAATCGCTAGTAATCGCGAAT 588
typeH AGTCCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAAT 730
type AGTCCGGATTGAAGTCTGCAACTCAACTTCATGAAGTTGGAATCGCTAGTAATCGCGAAT 628
typeC AGTCCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAAT 598
typeA AGTCCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAAT 585
group3 AGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAAT 1196
group4 AGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAAT 1199
Rice AGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAAT 1328
typeJ AGTTCGGATTGAAGTCTGCAACTCGTCTTCATGAAGTTGGAATCGCTGGTAATCCCGAAT 592
Brachiaria AGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAAT 1330
variantI AGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAAT 1329
variantII AGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAAT 1228
white AGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAAT 1330
typeB AGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAAT 386
Maize AGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAAT 1339
typeG AGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAAT 552
Barley AGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAAT 1339
Saccharum GTACAGTGGATGCCTTGGCACTAAGAGCCGATGAGGGACG-------------------- 508
Cubansugarcane ------------------------------------------------------------
Sugarcanegreen ------------------------------------------------------------
Bermudagrass GTACAGTGGATGCCTTGGCACTAAGAGCCGATGAAGGACG-------------------- 809
Deltocephalus ------------------------------------------------------------
Sorghum CAGCATTCCCTAAAATTTACGTTTCTGGCGGTGAATAC-GTTCTCCCGGTTTG---TACA 1371
Mauritius_ CAGCATGTC------------------GCGGTGAATAC-GTTCACGGGGTTTG---TACA 1239
Cynodon CAGCATTCCCTAAAATTTACGTTTCTGGCGGTGAATAC-GTTCTCCCGGTTTG---TACA 1371
Stolbur CAGCATTCCCTAAAATTTACGTTTCTGGCGGTGAATAC-GTTCTCCCGGTTTG---TACA 1371
typeE CAGCATGTC------------------GCGGTGAATAC-GTTCTCGGGGTTTG---TACA 635
typeI CAGCATGTC------------------GCGGTGAATAC-GTTCTCGGGGTTTG---TACA 626
typeH CAGCATGTC------------------GCGGTGAATAC-GTTCTCGGGGTTTG---TACA 768
type -AGCATGTC------------------GGGGTGAATAC-GTTCTCGGGGTTTG---TACA 665
typeC CAACATGTC------------------GCGGTGAATAC-GTTCTCGGGGTTTG---TACA 636
typeA CAGCATGTC------------------GCGGTGAATAC-GTTCTCGGGGTTTG---TACA 623
group3 CAGCATGTC------------------GCGGTGAATAC-GTTGACGGGGTTTG---TACA 1234
group4 CAGCATGTC------------------GCGGTGAATAC-GTTCACGGGGTTTGGTACACA 1240
Rice CAGCATGTC------------------GCGGTGAATAC-GTTCTCGGGGTT--------- 1360
typeJ CAAGTCGTG------------------GTGAAGAATGT-CGTCGTGGGTTTTTGTCCCCG 633
Brachiaria CAGCATGTC------------------GCGGTGAATAC-GTTCTCGGGGTTTG---TACA 1368
variantI CAGCATGTC------------------GCGGTGAATAC-GTTCTCGGGGTTTG---TACA 1367
variantII CAGCATGTC------------------GCGGTGAATAC-GTTCTCGGGGTTTG---TACA 1266
white CAGCATGTC------------------GCGGTGAATAC-GTTCTCGGGGTTTG---TACA 1368
typeB CAGCATGTC------------------GCGGTGAATACCGTTCTCGGGGTTTG---TACA 425
Maize CAGCATGTC------------------GCGGTGAATAC-GTTCTCGGGGTTTG---TACA 1377
typeG CAGCATGTC------------------GCGGTGAATAC-GTTCTCGGGGTTTG---TACA 590
Barley CAGCATGTC------------------GCGGTGAATAC-GTTCTCGGGGTTTG---TACA 1377
Saccharum ------------------------------------------------------------
Cubansugarcane ------------------------------------------------------------
Sugarcanegreen ------------------------------------------------------------
Bermudagrass ------------------------------------------------------------
Deltocephalus ------------------------------------------------------------
Sorghum CACCGCCCGTCAAACCACGAAAGTTGGCAATACCCAAAGCCGGTGGCCTAACTTGAGCAA 1431
Mauritius_ CACCGCCCGTCA------------------------------------------------ 1251
Cynodon CACCGCCCGTCAAACCACGAAAGTTGGCAATACCCAAAGCCGGTGGCCTAACTTGAGCAA 1431
Stolbur CACCGCCCGTCAAACCACGAAAGTTGGCAATACCCAAAGCCGGTGGCCTAACTTGAGCAA 1431
typeE CACCGCCCGTCAAACCACGAAAGTTGGCAATACCCCAAAACGGTAGCCTAACTCGTTTAT 695
typeI CACCGCC-GTCAAACCACGAAAGTTGGCAATACCCCAAAACGGTAGCCTAACTCGTTTAT 685
typeH CACCGCCCGTCAAACCACGAAAGTTGGCAATACCCCAAAACGGTAGCCTAACTCGTTTAT 828
type CACCGCCCGGCCAACCCCGAAAGTTGGCAATACCCCAAAACG------------------ 707
typeC CACCGCC-GTCAAACCACGAAAGTTGGCAATACCCCAAAACGGTAGCCGGAGCCGTTTAA 695
typeA CACCGCCCGTCAAACCACGAAAGTTGGCAATACCCCAAAACGGTAGCCTAACTCGTTTTT 683
group3 CACCGCCCGTCA------------------------------------------------ 1246
group4 AATCACTAGTCA------------------------------------------------ 1252
Rice ------------------------------------------------------------
typeJ CCCGTC------------------------------------------------------ 639
Brachiaria CACCGCCCGTCAAACCACGAAAGTTGGTAATACTCGAAAACGGTAGCCTAACTTCTTCGG 1428
variantI CACCGCCCGTCAAACCACGAAAGTTGGTAATACTCGAAAACGGTAGCCTAACTTCTTCGG 1427
variantII CACCGCCCGTCAAACCACGAAAGTTGGTAATACTCGAAAACGGTAGCCTAACTTCTTCGG 1326
white CACCGCCCGTCAAACCACGAAAGTTGGTAATACTCAAAAACGGTAGCCTAACTTCTTCGG 1428
typeB CACCGCCCGTCAAACCACGAAAGTTGACAATACCCGAAAGCAGTGACTTAACTTCGATAC 485
Maize CACCGCCCGTCAAACCACGAAAGTTGGCAATACCCAAAGCCGGCGGCCTAACTTCGCAAG 1437
typeG CACCGCCCGCCAAACCACGAAAGTTGGCAATACCCAAAGCCGGTGGCCTAACTTCGCAAG 650
Barley CACCGCCCGTCAAACCACGAAAGTTGGTAATACCCAAAGCCGGTGGCCTAACTTCGCAAG 1437
Saccharum ------------------------------------------------------------
Cubansugarcane ------------------------------------------------------------
Sugarcanegreen ------------------------------------------------------------
Bermudagrass ------------------------------------------------------------
Deltocephalus ------------------------------------------------------------
Sorghum TCAAGAAGGAGCCGTCTAAGGTAGGGTTGATGATTGGGGTTAAGTCGTAACAAGGTATGG 1491
Mauritius_ ------------------------------------------------------------
Cynodon TCAAGAAGGAGCCGTCTAAGGTAGGGTTGATGATTGGGGTTAAGTCGTAACAAGGTATGG 1491
Stolbur TCAAGAAGGAGCCGTCTAAGGTAGGGTTGATGATTGGGGTTAAGTCGTAACAAGGTATGG 1491
typeE TCGAG-GGGCGCCGTCTAAGGT-GGGTCGATGATTGGGGT--AGTCGTAACAAGCGGTTC 751
typeI TCGAGAGGGCGCCGTCTAAGGTAGGGTCGATGATTGGGGTTAAGTCGTAACAAGG----- 740
typeH TCGAGAGGGCGCCGTCTAAGGTAGGGTCGATGATTGGGGTTAAGTCGTAACAAGGTATCC 888
type ------------------------------------------------------------
typeC GGTAGAGGGGGTGATGATGGTTAGGGTTAAGGAAT------------------------- 730
typeA TTGAGAGGGCGCTGTCTAAGGTAGGGTTGATGATTGGGGTTAAGTCGTAACAAGGTATCC 743
group3 ------------------------------------------------------------
group4 ------------------------------------------------------------
Rice ------------------------------------------------------------
typeJ ------------------------------------------------------------
Brachiaria AAGAG--GGAACCGTCTAAGGTAGGATCGATGATTGGGGTTAAGTCGTAACAAGGTATCC 1486
variantI AAGAG--GGAACCGTCTAAGGTAGGATCGATGATTGGGGTTAAGTCGTAACAAGGTATCC 1485
variantII AAGAG--GGAACCGTCTAAGGTAGGATCGATGATTGGGGTTAAGTCGTAACAAGGTATCC 1384
white AAGAG--GGAACCGTCTAAGGTAGGATCGATGATTGGGGTTAAGTCGTAACAAGGTATCC 1486
typeB GAGAG--GGAACTGTCTAAGGTAGGGTTGATGATTGGGGTTAAGTCGTAACAAGGTATCC 543
Maize AAGAG--GGAACCGTCTAAGGTAGGGTCGATGATTGGGGTTAAGTCGTAACAAGGTATCC 1495
typeG AAGAG--GGAACCGTCTAAGGTAGGGTCGATGATTGGGGTTAAGTCGTAACAAGGTATCC 708
Barley AAGAG--GGAACCGTCTAAGGTAGGGTCGATGATTGGGGTTAAGTCGTAACGAGGTATCC 1495
Saccharum ------------------------------------------------------------
Cubansugarcane ------------------------------------------------------------
Sugarcanegreen ------------------------------------------------------------
Bermudagrass ------------------------------------------------------------
Deltocephalus ------------------------------------------------------------
Sorghum GTACCGGAAGGTCCGGATGGATCACCTGG------------------------------- 1520
Mauritius_ ------------------------------------------------------------
Cynodon GTACCGGAAGGTCCGGATGGATCACCTGGT------------------------------ 1521
Stolbur GTACCGGAAGGTGGGGATGGATCACCTGGA------------------------------ 1521
typeE CCTAA------------------------------------------------------- 756
typeI ------------------------------------------------------------
typeH CTACCGGAAGGTGGGGATGGAT-------------------------------------- 910
type ------------------------------------------------------------
typeC ------------------------------------------------------------
typeA CTACCGGAAGGTGGGGATGGATCACCT--------------------------------- 770
group3 ------------------------------------------------------------
group4 ------------------------------------------------------------
Rice ------------------------------------------------------------
typeJ ------------------------------------------------------------
Brachiaria CTACCGGAAGGTGGGGATGGATCACCTCCTTTCT-------------------------- 1520
variantI CTACCGGAAGGTGGGGATGGATCA------------------------------------ 1509
variantII CTACCGGAAGGTGGGGATGGATCA------------------------------------ 1408
white CTACCGGAAGGTGGGGATGGATCACCTCCTTTCT-------------------------- 1520
typeB CTACCGGAAGGTGGGGATGGATCA------------------------------------ 567
Maize CTACCGGAAGGTGGGGATGGATCACCTCCTTT---------------------------- 1527
typeG CTACCGGAAGGTGGGGATGGATCA------------------------------------ 732
Barley CTACCGGAAGGTGGGGATGGATCACCTCCTTTCTAAGGAAACAATTATCATCTTCAGTTT 1555
Saccharum ------------------------------------------------------------
Cubansugarcane ------------------------------------------------------------
Sugarcanegreen ------------------------------------------------------------
Bermudagrass ------------------------------------------------------------
Deltocephalus ------------------------------------------------------------
Sorghum ------------------------------------------------------------
Mauritius_ ------------------------------------------------------------
Cynodon ------------------------------------------------------------
Stolbur ------------------------------------------------------------
typeE ------------------------------------------------------------
typeI ------------------------------------------------------------
typeH ------------------------------------------------------------
type ------------------------------------------------------------
typeC ------------------------------------------------------------
typeA ------------------------------------------------------------
group3 ------------------------------------------------------------
group4 ------------------------------------------------------------
Rice ------------------------------------------------------------
typeJ ------------------------------------------------------------
Brachiaria ------------------------------------------------------------
variantI ------------------------------------------------------------
variantII ------------------------------------------------------------
white ------------------------------------------------------------
typeB ------------------------------------------------------------
Maize ------------------------------------------------------------
typeG ------------------------------------------------------------
Barley TGAGAGACTTAAGAAAGTTTTTCATTGTAACTTGCTTGCAAATTGTATTTGCAACATTTT 1615
Saccharum ------------------------------------------------------------
Cubansugarcane ------------------------------------------------------------
Sugarcanegreen ------------------------------------------------------------
Bermudagrass ------------------------------------------------------------
Deltocephalus ------------------------------------------------------------
Sorghum ------------------------------------------------------------
Mauritius_ ------------------------------------------------------------
Cynodon ------------------------------------------------------------
Stolbur ------------------------------------------------------------
typeE ------------------------------------------------------------
typeI ------------------------------------------------------------
typeH ------------------------------------------------------------
type ------------------------------------------------------------
typeC ------------------------------------------------------------
typeA ------------------------------------------------------------
group3 ------------------------------------------------------------
group4 ------------------------------------------------------------
Rice ------------------------------------------------------------
typeJ ------------------------------------------------------------
Brachiaria ------------------------------------------------------------
variantI ------------------------------------------------------------
variantII ------------------------------------------------------------
white ------------------------------------------------------------
typeB ------------------------------------------------------------
Maize ------------------------------------------------------------
typeG ------------------------------------------------------------
Barley AATCTTTTTAAGATTAAGGGCCTATAGCTCAGTTGGTTAGAGCACACGCCTGATAAGCGT 1675
Saccharum ------------------------------------------------------------
Cubansugarcane ------------------------------------------------------------
Sugarcanegreen ------------------------------------------------------------
Bermudagrass ------------------------------------------------------------
Deltocephalus ------------------------------------------------------------
Sorghum ------------------------------------------------------------
Mauritius_ ------------------------------------------------------------
Cynodon ------------------------------------------------------------
Stolbur ------------------------------------------------------------
typeE ------------------------------------------------------------
typeI ------------------------------------------------------------
typeH ------------------------------------------------------------
type ------------------------------------------------------------
typeC ------------------------------------------------------------
typeA ------------------------------------------------------------
group3 ------------------------------------------------------------
group4 ------------------------------------------------------------
Rice ------------------------------------------------------------
typeJ ------------------------------------------------------------
Brachiaria ------------------------------------------------------------
variantI ------------------------------------------------------------
variantII ------------------------------------------------------------
white ------------------------------------------------------------
typeB ------------------------------------------------------------
Maize ------------------------------------------------------------
typeG ------------------------------------------------------------
Barley GAGGTCGGTGGTTCAAGTCCATTTAGGCCCACCATAACCACAAATAGGCAAAATCTTAAA 1735
Saccharum ------------------------------------------------------------
Cubansugarcane ------------------------------------------------------------
Sugarcanegreen ------------------------------------------------------------
Bermudagrass ------------------------------------------------------------
Deltocephalus ------------------------------------------------------------
Sorghum ------------------------------------------------------------
Mauritius_ ------------------------------------------------------------
Cynodon ------------------------------------------------------------
Stolbur ------------------------------------------------------------
typeE ------------------------------------------------------------
typeI ------------------------------------------------------------
typeH ------------------------------------------------------------
type ------------------------------------------------------------
typeC ------------------------------------------------------------
typeA ------------------------------------------------------------
group3 ------------------------------------------------------------
group4 ------------------------------------------------------------
Rice ------------------------------------------------------------
typeJ ------------------------------------------------------------
Brachiaria ------------------------------------------------------------
variantI ------------------------------------------------------------
variantII ------------------------------------------------------------
white ------------------------------------------------------------
typeB ------------------------------------------------------------
Maize ------------------------------------------------------------
typeG ------------------------------------------------------------
Barley AAAGCTCTTTGAAAAGTAGATAAACGAAGGTTAAAAAATCAAAGGAACTAAGGGCGCACA 1795
Saccharum ------------------------------------------------------------
Cubansugarcane ------------------------------------------------------------
Sugarcanegreen ------------------------------------------------------------
Bermudagrass ------------------------------------------------------------
Deltocephalus ------------------------------------------------------------
Sorghum -----------------------------------
Mauritius_ -----------------------------------
Cynodon -----------------------------------
Stolbur -----------------------------------
typeE -----------------------------------
typeI -----------------------------------
typeH -----------------------------------
type -----------------------------------
typeC -----------------------------------
typeA -----------------------------------
group3 -----------------------------------
group4 -----------------------------------
Rice -----------------------------------
typeJ -----------------------------------
Brachiaria -----------------------------------
variantI -----------------------------------
variantII -----------------------------------
white -----------------------------------
typeB -----------------------------------
Maize -----------------------------------
typeG -----------------------------------
Barley GTGGATGCCTTGGCACTAAGAGCCGATGAAGGACG 1830
Saccharum -----------------------------------
Cubansugarcane -----------------------------------
Sugarcanegreen -----------------------------------
Bermudagrass -----------------------------------
Deltocephalus -----------------------------------