Gossypium ------------------------------------------------------------
G.hirsutum TCGACATCGTCGTAGAGTAGGAAAACTCTCAGGCCCGAGCAGCTATTTCGGTGGGGTAAA 60
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum GATGATGCTCCTTTCGGACTGATAGTGGTTGTTGTTATTAAACAACACATTAATAACTAC 120
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum AACTGCTACCGTTGACCCAAGTTTGACCTTTACTTCTTCCGAAACATCTACTCTCTCCTT 180
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum GAGAGTCCTCTTGTGTCCACCTCGATGTCAACATTCATATAAGAATGAAAGGTTAAAGAT 240
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum ATCGGGTGCGTGGAAATAGAAAAAAAATACGTTGATTACATCAGAAATCCCTTTGTTTTT 300
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum CCTTATAATTATGACCTCAATCTTATGTATAGTATATATAAGGCATCATTTGCAGGATAT 360
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum TAAAAAAGCTTGAACTCGTGACTGCGTAACGACCATTAACTGGCCTCCGGTTATATTAGA 420
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum ACATGTGACCATATCACGGCCGCCGACTGGGACCTCCACTTAGACTTCGACTCCTGATCT 480
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum TGTCAAGCACAATCACCTCGAAACTAGATTTCCCCAAAATGGGTTTCTGAAGTTATAGTT 540
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum CTATCCACCATGACATAGGGAATGTATGTGTTGTGATGTGCGTTATTACATCCCGAACCC 600
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum TCAAAACTACCTTTGAAATTCTTCAGTTTCAATCGAAAACCCTAAACTCTATTAAAAAAA 660
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum CCCCAAAGCCCTAAACCTAAAAATATTAAAAACCCTAACCCTAAGAGAGAGAAACAAAAA 720
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum GTCCGTCCAATCTCTCTCAAAAAATGACATATTTCCCTAAATTAAAGAAAAAAGGCTTAT 780
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum AAGGCTAATTTTTTTTTAAAAAAAAACCTAGTATATATGGCTAATTTAGCTTATATTTTT 840
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum TTGTTCATTTTTAAATATATAAAATATAAATTTTAAATATTTTTAAGCAATAAATGTTAA 900
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum TTATTTATAAAATTTAATTCAAATTTATAAATTATGTTTTAAATATTAAAATACAATCAA 960
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum CAAAAAATTAAATATTTAATAGTATATATTTAAAATAAATTTCAATAGAAAATAATATAT 1020
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum AAAATACTTTATAATGGTTAAAATCATCTCTTATTTTTAAAAGAGCTTTTGCTTTAGGAA 1080
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum AAAATATTTTTACTTTTATATTAAAAGCACCTCTAATTCTAAAAGTTCTCTGTTTAGTAT 1140
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum TATTTGTTACTCCAAACATATTTTTGATACCAAAAACAAAAATCGGTGAAGGAGGGTTGG 1200
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum CAATGTGTACAAAGACCAAAGAGGCTCATATAACGGGCCCATTTTCCGGCCTACAGATCT 1260
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum GTATTCGATGCTGTCCGATCTAGCTATTCTTCCGGCGGGCTTTTAGCCATAAGGTCCGTA 1320
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum ACCTTCAAATGGTGTGAAGAAGGCTTTCCTCAAACACTCAACATGTTTTCGTTCCCGAAA 1380
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum GATCTGAGAAACCAAATAAATTATTTACTAGTAAGTAATAGTACTAGGTGCTTAAATCTA 1440
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum CGAGCATTGGACTCGTGTCAAACGACTTTGAATCCAAAATACATTTTTGAAGGACTAAGC 1500
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum ACCTGCGTGTCATTGCCATATGGCTTCATTGCTCCTCCTTCGCCGCGTTTATTCGATTAC 1560
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum GTGTCCTGCCTTCCTTGATCGGCACCCTTGCTCATCCTTCATACCTTGCCTTTATATAAA 1620
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum GCACCAACTCTACGTTTTGTATGCACAATTACGTGAATTCACCTGGTGTAAGCTTGTCTC 1680
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium -----------------------------------------CCCGAGAAGAGTGAAAGTG 19
G.hirsutum AGTAGTTTCCAAGTTGTTTTTACGAAAGAAGCAAAAGTAACCCCGAGAAGAGTGAAAGTG 1740
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium GCCATGGCATCGCAACAGGAAAGACAGGAACTTGACGCCAGGGCAAGGCAGGGAGAGACG 79
G.hirsutum GCCATGGCATCGCAACAGGAAAGACAGGAACTTGACGCCAGGGCAAGGCAGGGAGAGACG 1800
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium GTTATTCCCGGTGGAACTGGTGGCAAGAGTCTCGAAGCTCAAGAGCACCTTGCAGAAGG- 138
G.hirsutum GTTATTCCCGGTGGAACTGGTGGCAAGAGTCTCGAAGCTCAAGAGCACCTTGCAGAAGGT 1860
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ----------------------------------------------CCGGGGAATTCGGC 14
Triticum -------------------------ATGGCCTCCAACCAGAACCAGGCGAGCTACATGGC 35
Gossypium ------------------------------------------------------------
G.hirsutum GACCCGCACCACCTGATGTCTGATTTGTTGTTTTGTATTCGTTATTCAATGCCTGCATTT 1920
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis CATTATGGCCGGGGATCTTTGTTGTTGTCGTTGTTGATTGAAGCTCAATAGAAGATACAG 74
Triticum CGGCGAAACCAAGGCCCGCACCGAGGAGAAGACCGGGCAGATGATGGACAAGGCGGGGCA 95
Gossypium --------------------------------------------------GAGGAGCCGT 148
G.hirsutum ATATGATACTGACCTATTAGTTTGGCGCTTTGATCGAATGGTGTTTTAGGGAGGAGCCGT 1980
T.ledebourii ----------------------------------------------------------GC 2
Pseudotsuga ------------------------------------------------------TGAAGT 6
Arachis AAAAATGAAATCTTCAAAGGAGAAGCTAAGCAACATGGTCAGTGCCGCCAAGGAACACGT 134
Triticum GGCCACGGAGGCCACTAAGCAGAAGGCCGGCGAGACGGCCGAGGCCACCAAGCAGAAGGC 155
*
Gossypium GGAGGTCAGACAAGGAAGGAGCAACTGGGGAGAGAAGGGTACCA--GGAGCTG--GGAAG 204
G.hirsutum GGAGGTCAGACAAGGAAGGAGCAACTGGGGAGAGAAGGGTACCA--GGAGCTG--GGAAG 2036
T.ledebourii TCAAGCTCAAGAAGATATGGCAGGTTATGCAGACCACCACGACACTGGTCCTGCTGGTGG 62
Pseudotsuga ATCATATCATGGCTGAGTACCAGG--ATCGAGGCCACACCCAAACTGACGCTGCTCGTCA 64
Arachis TGACATCTGCGGAGCCAAAATTGAC-GAGAAGACAGAGAAAGCAAGGGCACGAACAGAGG 193
Triticum CGGCGAGGCCAAGGACAAGACGGCGCAGACGGCACAGGCAGCCAAGGACCGCGCCGCCGA 215
* * *
Gossypium CAAAGGAGGTCAGAC--AAGAAA-G--GAGCAGATAGGGACTGAAGGGTACCAG-GAAAT 258
G.hirsutum CAAAGGAGGTCAGAC--AAGAAA-G--GAGCAGATAGGGACTGAAGGGTACCAG-GAAAT 2090
T.ledebourii AACTGGGTATGGGAC--TGGGACTG--GGACTGAGAAGAAAGGAATGGTGGAGA-ATATC 117
Pseudotsuga TAATCCGAATGAGAAGGCGGGGCTGCTGGATAAAATCAAACAGATGCTTCCCGG-AGGTC 123
Arachis AGGAGAAAGTGATAGCACATGAGCGCGCAAAGGCGAGAGAAGCAAAGGCAAAAATGGAGT 253
Triticum GAGCAAGGACCAGACAGGCAGCTTCCTCGGCGAGAAGACGGAGGCGGCCAAGCAGAAGGC 275
*
Gossypium GGG--GCGAAAAG--GTGGACTGAGTACGATGGACAAGT-CGGGAGTAGAGCG-TGCAGC 312
G.hirsutum GGG--GCGAAAAG--GTGGACTGAGTACGATGGACAAGT-CGGGAGTAGAGCG-TGCAGC 2144
T.ledebourii AAA--GAGAAGTT--GCCTGGTGCGCACAA-GGATCAGC-CAGG-GCAGTGTACTACTGG 170
Pseudotsuga AGA--CTCAGACTCAGTCGACTGCTCATTCTCATCCAACTCAGAAACCAGGAAGCCAGGC 181
Arachis TGC--ATGAAGCCAAAGCCAG-GCATGCAGCCGAGAAGCTAAGCACCAAGCAGGCGCACC 310
Triticum CGCCGAGGCAACAGAGGCGGCCAAGCAGAAGACGTCGGAGACGGCGCAGTACGCGCAGGA 335
*
Gossypium TGAGGAAGGAATCGACATTGACGAGTCCAAATAC--AGAACTTGATGCAATAGCCCCTTA 370
G.hirsutum TGAGGAAGGAATCGACATTGACGAGTCCAAATAC--AGAACTTGATGCAATAGCCCCTTA 2202
T.ledebourii TGGGACTGGGACTG-CGCACGTGCATCCACATGAGAAGAAAGGAATGGCGGAGAATATCA 229
Pseudotsuga TCAGGCTCAGACTGGT-TATTCCAATTCAAACCAGAAGCCGGGGATGGTGGATAAAATCA 240
Arachis TGGACCCTTCCTCGTTTGGAGCACACCATCAGCAGCCCCCAACAACAACGCACCAGCAGC 370
Triticum GCGGTCCTCCGACGCCGCACAGTACACCAAGGAATCAGCCGTCGCCGGCAAGGACAAGAC 395
*
Gossypium AGTGCTTGCTGGCACTGTGTTTTGCGTAA----GTCGAGAGTCTTGGTAGTTTTGTGTAA 426
G.hirsutum AGTGCTTGCTGGCACTGTGTTTTGCGTAA----GTCGAGAGTCTTGGTAGTTTTGTGTAA 2258
T.ledebourii AAGAGAAGTTGCC----TGGCCCACACAA----CAATTAGGCTTTCTCGGTTTGCTCAAG 281
Pseudotsuga AAGCGAAGATCCC----TGGACTCCACTA----GAGCAAGTCAT--GAGGAAAGCTGAAG 290
Arachis CATTAGGGTCTCTTGCAACGCCTGCTGGA----GGAGTCACCAATCCTTCATATCCATTG 426
Triticum CAGCGGCGTGCTCCAGCAGGCCAGCGAGACGGTGGTGAACGCCGTGGTGGGCGCCAAGGA 455
* * *
Gossypium CTCTAGGTTGACCA-AGTGTTAA-GATCGT-ATCTTTTTCTGTAACCCCCCTGC-ATGTT 482
G.hirsutum CTCTAGGTTGACCA-AGTGTTAA-GATCGT-ATCTTTTTCTGTAACCCCCCTGC-ATGTT 2314
T.ledebourii TTGGAACACAATAATAATAATAATAATAAT-AATAATAATAATAATAATAATGT-GTAAT 339
Pseudotsuga GGCAAGAGAATTAGTATTGGTACATCTGGCCATCCCTTCGTATGGCTTTTCCGTTGAGAA 350
Arachis GGAGGAAATCATCATATCAATAAGCACATTTAGATATATGTGTATGTATACGGTTATACT 486
Triticum CGCGGTGGCGAACACGCTGGGCATGGGCGGCGACAACACCAACACCGCCAAGGACACCAC 515
*
Gossypium TAGGTAGTTACTAATGGAGTG-GCATGGCATATGAGAGGTT-TTCAGTTTGCAAGGTGCC 540
G.hirsutum TAGGTAGTTACTAATGGAGTG-GCATGGCATATGAGAGGTT-TTCAGTTTGCAAGGTGCC 2372
T.ledebourii GTGGTCGTCTGGCCTGGCGAGCACATAGCCTCTGTTTGTTCACTTAGTTCATGAAGTTTA 399
Pseudotsuga TAGACCGATAATAAGCATCATTATATGAATACTGTGTG-----TTAGAATACAGAACTAC 405
Arachis TAGTTATTCCCCCCACTGATGGCCACTACTACTGTTT-----CTTTGCGTGTTAGTTTCT 541
Triticum CACCGAGAAAGATCACCAGGGATCACTAGCTA-ATTTGCTTCCTTTACTCGTTTGGTCGT 574
* *
Gossypium T-CTCTTCTT-TCTGTATGCTTTTTGACTATGGAATGAAATGTGTTTTTGGTTGATATGT 598
G.hirsutum T-CTCTTCTT-TCTGTATGCTTTTTGACTATGGAATGAAATGTGTTTTTGGTTGATATGT 2430
T.ledebourii GATTCATGTT-CTTGTAT-TTGTGTAAATGCACTGTTAAACATGTCTCGCGAACTTGTGG 457
Pseudotsuga GACCCCGATT-C--GAATTCCATGTTAGTATATTATTTGGCTTGGCGGAGATTTCCATTC 462
Arachis GTTTCTGGTTGTTCACATTTTCAGTTGTTA-GTTATCGGATATGTAATGTGGGAGCGAGG 600
Triticum T-CGCGGGCCTTTTACATAATTGTAGGTTTCCCTCTTG--TGTGATTTCCGCCCATTTGG 631
* ** * * **
Gossypium T----------------------------------------------------------- 599
G.hirsutum TATTGGAATGCGCGGAGCATAAACTAATCCTGAATGTGAGGCAAGATTCTAAAATGCATC 2490
T.ledebourii AATGTGAAAAAAAAAAAAAAAAAAA----------------------------------- 482
Pseudotsuga TGTTTACTTGCATATAGCCGTTA------------------------------------- 485
Arachis GGCGTGTTAGCTTTCTTGTATAGTTGTATGTACTTGAGAACGGTTTGTATCTCCTGGGTA 660
Triticum TGTAAGTTTGCCTTCGATTTGATGTACTCCTCG--------------------------- 664
Gossypium ------------------------------------------------------------
G.hirsutum CTCAATGAGGTGGGACATATAGGGTCGATATTCGACTTAATAGTGTTACATGAGCAACCC 2550
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ATAAGTTTTGAATC---------------------------------------------- 674
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum TTTTGGAACATATTAATAACAACACACAACTAAAGCTGGCCTGTCACTGTTCTTTTTCAA 2610
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum CCTCGTGGGGTTTTCATGGTTATAATAGCAGTTTATTTGCAGGATTTTCAAGAAGGATGA 2670
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum CTCTGGGAGTTGTTTGCGTCCAAGCTAGTATTTCAATAGGAAAAACATACTTGTGATTTC 2730
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum TATGATTAATAACCTTGTTGAAAAGTAAATAAGAACAAAATTCGTCTGCCCCCATCGTGT 2790
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum ACCTCTTTGTGTGCGGTCAACTGAGATTTTGCCGTTTACTTCTCCATCACCAGTGATTAG 2850
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum AGCTGTGGCCTTTCTCTGGAAACCCCTCTAGAACCTTCTTCTAGACACTCCAATGCTTTT 2910
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum GTGTTATGAAATCTAGCTGTCGGCGCTAATGGTTTTATTTGGGAGGTGGAAGTTTCCAAT 2970
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum AGAGAAACATTTTCTATTTTTCACTTCAATTCCTTGGACAAATTGTTGGTGATTTTGATC 3030
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium ------------------------------------------------------------
G.hirsutum TATTTTTATTCCTGCAATTCACTCTCTTCAAGGAGGAGCATTTTCCCACTATATTATTAT 3090
T.ledebourii ------------------------------------------------------------
Pseudotsuga ------------------------------------------------------------
Arachis ------------------------------------------------------------
Triticum ------------------------------------------------------------
Gossypium --------------------------------------
G.hirsutum GTTGCAATTGAAATCTCATCTATATACTAACTAAGATC 3128
T.ledebourii --------------------------------------
Pseudotsuga --------------------------------------
Arachis --------------------------------------
Triticum --------------------------------------
