ABOUT DATABASE
    This database contains the results of potential SSRs and SNPs detected from the cocoa (Theobroma cacao) and Oil Palm (Elaeis guineensis) EST resources. This EST resources mined using mining software and preserved for the analysis. Due to more number of sequences these ESTs were clustered together using CAP3 and phrap software. These software would provide contigs for the largest size of the ESTs. These ESTs and contigs are used to find the SSRs and SNPs. Opensource SSR and SNP finding software available used in this study. These ESTs and Contigs are analysed through MISA, TRA, TROLL, SSR Primer and SSRIT, found SSR, SSR type and SSR primer. These results are provided by selecting the navigation menu. All EST /contigs libraries for cocoa and oilpalm are also provided.
SNP Results:
    Using contigs some of the SNP detecting web tools are available at PBC bioinformatics site, Autosnp software also detect SNPs. Each contig link provided for getting the SNP results. These results are provided for future use.
 
Primer Results:
    Using the detected SSR primers were desiged for validating the work. Used primer details are provided throughout this database. This primer were checked in the wet lab for validation.
 
    The results of the study are given as an online database ‘MEMCO’ to help Oil palm and Cocoa researchers. The result of this study has many practical implications for Cocoa and Oil palm breeders.
 
 
Fig:1. THE ARCHITECT OF MEMCO DATABASE
 

 

 

 
COCOA
 
 
 
 
EST derived SSR
Contigs derived SSR
Primer Results
 
 
OIL PALM
 
 
 
 
EST derived SSR
Contigs derived SSR
Primer Results
 
 
Cocoa & Oilpalm
 
SSR WEB TOOL