About 16 entries found
Sl.NoContigsSSR nrSSR typeSSR
1 immzygryo.fasta.Contig4 1 c (GT)8ctaatgtaataatttaggcttatgatgtaatatgacgagtttaaaagttttagt(A)12
2 abnapex.fasta.Contig85 1 p1 (A)20
3 abnapex.fasta.Contig67 1 p1 (A)20
4 abnapex.fasta.Contig70 1 p1 (A)46
5 abnapex.fasta.Contig14 1 p1 (T)20
6 abnapex.fasta.Contig51 1 p1 (T)21
7 abnapex.fasta.Contig69 1 p1 (T)21
8 abnapex.fasta.Contig29 1 p1 (T)26
9 abnapex.fasta.Contig50 1 p1 (T)43
10 abnapex.fasta.Contig84 1 p1 (T)52
11 maleinflor.fasta.Contig49 1 p2 (AG)16
12 immzygryo.fasta.Contig2 1 p2 (AG)35
13 abnapex.fasta.Contig47 1 p2 (CT)17
14 maleinflor.fasta.Contig27 2 p3 (CAG)7
15 maleinflor.fasta.Contig19 1 p3 (CCT)7
16 immzygryo.fasta.Contig6 1 p4 (TATG)5

 

The Computational analysis of Cocoa contigs - SSR by MISA( Thiel et al. 2003 )

 

SSR type
Total
Percentage

Monomer

2
12.50%

Dimer

3
18.75%

Trimer

3
18.75%

Tetramer

2
12.50%

Compound repeats

6
37.50%

Total number of sequences analyzed: 769

Total number of SSRs found in sequences: 16

The mononucleotide 'A' has repeated 2(12.5%) pf the total SSR

COCOA
 
EST/Contigs Library
 
 
EST derived SSR
Contigs derived SSR
Primer Results
 
OIL PALM
 
EST/Contigs Library
 
 
EST derived SSR
Contigs derived SSR
Primer Results
 
 
Cocoa & Oilpalm
 
 
SSR WEB TOOLS