Untitled Document
Sl.NO Accession NO SSR Repeat Type SSR
1 CA7942921c(T)11gtttatctag(T)10
2 CA7943571c(T)11gtttatctag(T)10
3 CA7945281c(GCA)7(ACA)6
4 CA7946331c(T)11n(T)18
5 CA7946351c(T)10ngn(T)17
6 CA7946421c(T)11ggggggn(T)13
7 CA7946441c(T)11gnttn(T)10
8 CA7946541c(T)11gtttn(T)12
9 CA7946691c(T)11nn(T)17
10 CA7946711c(T)11gnct(TTC)7
11 CA7946721c(T)14ngg(T)10
12 CA7950331c(CAG)5cggccttatcaacggcg(GCA)5
13 CA7952351c(T)17c(T)12
14 CA7953831c(CAG)5cggccttatcaacggcg(GCA)5
15 CA7953971c(T)11gtttatctag(T)10
16 CA7957771c(T)11gtttatctag(T)10
17 CA7962421c(CAG)5cggccttatcaacggcg(GCA)5
18 CA7963951c(CAG)5cggccttatcaacggcg(GCA)5
19 CA7967511c(CAG)5cggccttatcaacggcg(GCA)5
20 CA7968621c(T)11gtttatctag(T)10
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The Computational analysis of Cocoa EST - SSR by MISA (Thiel et al. 2003)

 

SSR type
Total
Percentage

Monomer

33
29.73%

Dimer

17
15.31%

Trimer

19
17.12%

Tetramer

4
3.60%
Hexamer
1
0.90%

Compound repeats

37
33.33%

Total number of sequences analyzed: 6581

Total number of SSRs found in sequences: 111

The mononucleotide 'T' has repeated 26 (23.42%) pf the total SSR
COCOA
 
 
EST/Contigs Library
 
 
EST derived SSR
Contigs derived SSR
Primer Results
 
 
OIL PALM
 
 
EST/Contigs Library
 
 
EST derived SSR
Contigs derived SSR
Primer Results
 
 
Cocoa & Oilpalm
 
 
SSR WEB TOOLS