The SNP detection report of the Oil Palm EST

The program, Auto SNP were used to find the SNP among the available Oil Palm EST.

Results Abnormal apex Normal apex Female inflorescence Male inflorescence Immature zygotic embryo Total Total sequences analysed 242 32 38 103 40 455 No of contigs and singletons made 86,0 13,0 16,0 44,0 9,0 168,0 Total SNPs detected 309 62 103 239 7 720 Total consensus size 35034 bp 5296 bp 5601bp 19790bp 4766bp 70487 bp SNP frequency 0.88/100 bp 1.17/100bp 1.84/100 bp 1.21/100bp 0.15/100bp 1.05/100bp Total transitions C / T = 111 G / A = 74 Total =185 C / T = 11 G / A =12 Total =23 C / T = 25 G / A = 32 Total =57 C / T = 90 G / A = 48 Total =138 C / T = 3 G / A = 0 Total =3 C / T = 240 G / A = 166 Total = 406 Total transversions A / T = 24 C / G = 40 G / T = 20 A / C =27 Total = 111 A / T = 5 C / G = 12 G / T = 2 A / C = 12 Total = 31 A / T = 7 C / G = 13 G / T = 15 A / C = 9 Total = 44 A / T= 19 C / G= 33 G / T= 13 A / C= 30 Total =95 A / T= 0 C / G= 2 G / T= 0 A / C= 1 Total= 3 A / T= 55 C / G= 100 G / T= 50 A / C= 79 Total= 284 Total indels A = 5 C = 4 G = 1 T = 3 Total =13 A = 2 C = 1 G = 3 T = 2 Total =8 A = 0 C = 0 G = 0 T = 2 Total 2 A = 1 C = 0 G = 3 T = 2 Total =6 A = 0 C = 0 G = 0 T = 1 Total=1 A = 8 C = 5 G = 7 T = 10 Total=30 Total transitions C / T = 111 G / A = 74 Total =185 C / T = 11 G / A =12 Total =23 C / T = 25 G / A = 32 Total =57 C / T = 90 G / A = 48 Total =138 C / T = 3 G / A = 0 Total =3 C / T = 240 G / A = 166 Total = 406