The Computational analysis of Cocoa EST - SSR by SSRIT (Temnykh et al. 2001 )

SSR type Total Percentage Dinucleotide 10 31.25% Trinucleotide 16 50% Tetranucleotie 2 6.25% Hexanucleotide 4 12.50% Total number of sequences analyzed: 6581 Total number of SSRs found in sequences: 32 The trinucleotide 'GAA' has repeated 4 (12.5%) of the total SSR

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Sl.NO Accession NO Motif SSR Repeat Start End Sequence Length 1 CA798467 aag 10 77 106 490 2 CF972885 aag 7 396 416 594 3 CA797616 ag 11 1 22 498 4 CA798530 ag 10 6 25 300 5 CF974237 ag 13 19 44 118 6 CA794728 aga 7 36 56 787 7 CF972661 ataa 5 275 294 434 8 CF972800 ataa 5 275 294 432 9 CA797692 ca 10 121 140 573 10 CA794528 caa 7 299 319 530 11 CF972909 cat 8 261 284 411 12 CF973084 catcac 4 156 179 455 13 CF973943 catcac 4 49 72 539 14 CA794771 ct 10 66 85 531 15 CA798341 ct 11 33 54 500 16 CA795413 ga 13 389 414 414 17 CA794352 gaa 8 167 190 540 18 CA795199 gaa 8 167 190 464 19 CA795200 gaa 8 167 190 278 20 CA798544 gaa 8 115 138 400
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