The Computational analysis of Cocoa EST - SSR by SSRIT (Temnykh et al. 2001 )

SSR type Total Percentage Dinucleotide 10 31.25% Trinucleotide 16 50% Tetranucleotie 2 6.25% Hexanucleotide 4 12.50% Total number of sequences analyzed: 6581 Total number of SSRs found in sequences: 32 The trinucleotide 'GAA' has repeated 4 (12.5%) of the total SSR

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Sl.NO Accession NO Motif SSR Repeat Start End Sequence Length 1 CA794528 gca 7 280 300 530 2 CK144296 gcacac 4 96 119 572 3 CF973953 gtgatg 4 531 554 613 4 CA794247 tc 14 9 36 486 5 CA798178 tc 18 50 85 281 6 CA798247 tc 15 253 282 320 7 CA794970 tca 7 409 429 532 8 CF974239 tca 9 94 120 153 9 CA798214 tct 7 100 120 277 10 CF974043 tct 8 104 127 394 11 CA794671 ttc 7 87 107 935 12 CF972846 ttc 8 204 227 605
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