About 7 entries found
Sl.NoContigsSSRSSR Count
1 beanandleaf.fasta.Contig286 2[AG] 11
2 beanandleaf.fasta.Contig284 2[AT] 11
3 beanandleaf.fasta.Contig320 2[CT] 11
4 beanandleaf.fasta.Contig72 3[AAC] 7
5 beanandleaf.fasta.Contig314 3[AAG] 10
6 beanandleaf.fasta.Contig316 3[GAA] 8
7 defencerelated.fasta.Contig113 3[AAG] 6
The in silico analysis of Cocoa contigs - SSR by TRA

 

SSR type
Total
Percentage

Dimer

3
42.87%

Trimer

4
57.17%

Total number of sequences analyzed: 769

Total number of SSRs found in sequences: 7

The mononucleotide 'AAG' has repeated 2(28.57%) of the total SSR

 

COCOA
 
 
 
 
EST derived SSR
Contigs derived SSR
Primer Results
 
 
OIL PALM
 
 
 
 
EST derived SSR
Contigs derived SSR
Primer Results
 
 
Cocoa & Oilpalm
 
SSR WEB TOOL