About 6 entries found
Sl.NoContigsMotifSSR RepeatsStartEndSequence Length
1 abnapex.fasta.Contig47-1 ct 17 77 110 530
2 immzygryo.fasta.Contig2-1 ag 35 1 70 536
3 maleinflor.fasta.Contig49-1 ag 16 15 46 392
4 maleinflor.fasta.Contig19-2 cct 7 96 116 499
5 maleinflor.fasta.Contig27-1 cag 7 196 216 393
6 immzygryo.fasta.Contig6-1 tatg 5 383 402 499
The Computational analysis of Oil Palm contigs - SSR by SSRIT (Temnykh et al. 2001)

 

SSR type
Total
Percentage

Dimer

3
50.00%

Trimer

2
33.33%

Tetramer

1
16.66%

Total number of sequences analyzed: 187

Total number of SSR found: 6

The dinucleotide 'AG' has repeated 2 (33.33%) times of the total SSR

 

COCOA
 
 
 
EST derived SSR
Contigs derived SSR
Primer Results
 
OIL PALM
 
 
 
EST derived SSR
Contigs derived SSR
Primer Results
 
 
Cocoa & Oilpalm
 
 
SSR WEB TOOLS