Untitled Document
Sl.NO Accession NO SSR Repeat Type SSR
1 CA7970721c(A)18ggcaaaataag(A)11
2 CA7970901c(CAG)5cggncttatcaacggcngn(AGC)5
3 CA7974551c(CT)8cgctttcccaaagctttga(T)15
4 CA7976472c(A)13gaaaaagaagataaaaaaggaacaaaaagcaaaaagaatacaaagtaaaaaaagaggtaataagaaag(A)17gaaggaaat(A)11gaacacacgagacaaaatccaaaacacaaagagaaaacagataaagaaaaaaaataaacgatca
5 CA7976523c(C)14ttaccccccccctgagaagaggggggcccccggcccgcgttcgcgggaggaacca(C)10
6 CA7976611c(A)14cccacccaagaaagaaacccaaaaacccaacc(A)13
7 CA7980181c(TA)11gattgaactctatatatttattaactcatctttaatacccagattccagtttctg(T)11
8 CA7980301c(TC)7ctttgcatggactgaagcaaactcgtttctctc(T)16(AT)11
9 CA7984441c(CAG)5cggccttatcaacggcg(GCA)5
10 CF9730381c(T)31gaagctaatcagttgataatattgntataaacttaagccttgaaattccataggttgctacag(A)10
11 CF9737721c(T)20ggtcaaacatttggatatatgacatgatttagaaggaaatttaacgaattt(CA)7
12 CF9739311c(T)30nc(T)18
13 CA7977011c(C)10(A)13
14 CA7977071c(G)10(C)16
15 CA7981791c*(A)19(AGA)5*
16 CF9744731c(A)10ggcaaaaagcatcatccaaatggaggctaaaaatacagagttagtaattttataatttaatgactacatgtcaaga(T)11
17 CF9746771c(A)10ggcaaaaagcatcatccaaatggaggctaaaaatacagagttagtaattttataatttaatgactacatgtcaaga(T)11
18 CA7942161p1(T)24
19 CA7942181p1(T)29
20 CA7945921p1(G)25
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The Computational analysis of Cocoa EST - SSR by MISA (Thiel et al. 2003)

 

SSR type
Total
Percentage

Monomer

33
29.73%

Dimer

17
15.31%

Trimer

19
17.12%

Tetramer

4
3.60%
Hexamer
1
0.90%

Compound repeats

37
33.33%

Total number of sequences analyzed: 6581

Total number of SSRs found in sequences: 111

The mononucleotide 'T' has repeated 26 (23.42%) pf the total SSR

COCOA
 
 
 
 
EST derived SSR
Contigs derived SSR
Primer Results
 
 
OIL PALM
 
 
 
 
EST derived SSR
Contigs derived SSR
Primer Results
 
 
Cocoa & Oilpalm
 
 
SSR WEB TOOLS