The Computational analysis of Cocoa EST - SSR by SSR Primer (Robinson et al . 2004 )

SSR type Total Percentage Dinucleotide 10 21.74% Trinucleotide 27 58.70% Tetranucleotie 6 13.04% Pentanucleotide 3 6.50% Total number of sequences analyzed: 6581 Total number of SSRs found in sequences: 46 The trinucleotide 'CTG' has repeated 7 (15.22%) of the total SSR

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Sl.NO Accession NO SSR Repeat Type SSR Repeats Start End Sequence Length 1 CF974377 dinucleotide TCTCTCTCTCCCTCTCTCTCTCT 116 138 23 2 CA798178 dinucleotide TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 50 86 37 3 CF974043 trinucleotide TCTTCTTCTTCTTCTTCTTCTTCTTC 104 129 26 4 CF974114 trinucleotide TTCTTCTTCTTCTCTTCTTCTT 260 281 22 5 CF972846 trinucleotide TTCTTCTTCTTCTTCTTCTTCTTCTT 204 229 26 6 CF974081 tetranucleotide TTCTTTCTTTGNTTTCTTTCTT 383 404 22
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