Untitled Document
Sl.NO Accession NO SSR SSR COUNT
1 CF9729093[CAT]8
2 CA7980383[CTT]10
3 CA7979953[GAA]7
4 CA7952003[GAA]8
5 CA7985443[GAA]8
6 CA7943523[GAA]8
7 CA7951993[GAA]8
8 CA7945283[GCA]7
9 CA7949703[TCA]7
10 CF9742393[TCA]9
11 CA7982143[TCT]7
12 CF9740433[TCT]8
13 CA7946713[TTC]7
14 CF9728463[TTC]8
15 CA7944735[ACCAA]4
16 CA7979236[CATCAC]5
17 CA7977256[CTCCCT]4
18 DN23795621[CAAATCTGGTGCTAATGCCTC]6
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The in silico analysis of Cocoa EST - SSR by TRA (Bilgen. et al. 2004)

 

SSR type
Total
Percentage

Monomer

32
41.03%

Dimer

19
24.36%

Trimer

22
28.20%

Pentamer

1
1.28%

Hexamer

2
2.56%
Above decamer
1
1.28%

Total number of sequences analyzed: 6581

Total number of SSRs found in sequences: 78

The mononucleotide 'T' has repeated 28 (35.81%) of the total SSR

COCOA
 
 
EST/Contigs Library
 
 
EST derived SSR
Contigs derived SSR
Primer Results
 
 
OIL PALM
 
 
EST/Contigs Library
 
 
EST derived SSR
Contigs derived SSR
Primer Results
 
 
Cocoa & Oilpalm
 
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