The Computational analysis of Cocoa EST - SSR by TROLL(Martins et al. 2006)

SSR type Total Percentage Monomer 31 48.44% Dimer 17 26.56% Trimer 15 23.43% Pentamer 1 1.56% Total number of sequences analyzed: 6581 Total number of SSRs found in sequences: 64 The mononucleotide 'T' has repeated 27 (42.18%) of the total SSR

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Sl.NO Accession NO SSR 1 CA797072 (A)18ggcaaaataag(A)11 2 CA797090 (CAG)5cggncttatcaacggcngn(AGC)5 3 CA797455 (CT)8cgctttcccaaagctttga(T)15 4 CA797647 (A)13gaaaaagaagataaaaaaggaacaaaaagcaaaaagaatacaaagtaaaaaaagaggtaataagaaag(A)17gaaggaaat(A)11gaacacacgagacaaaatccaaaacacaaagagaaaacagataaagaaaaaaaataaacgatca 5 CA797652 (C)14ttaccccccccctgagaagaggggggcccccggcccgcgttcgcgggaggaacca(C)10 6 CA797661 (A)14cccacccaagaaagaaacccaaaaacccaacc(A)13 7 CA798018 (TA)11gattgaactctatatatttattaactcatctttaatacccagattccagtttctg(T)11 8 CA798030 (TC)7ctttgcatggactgaagcaaactcgtttctctc(T)16(AT)11 9 CA798444 (CAG)5cggccttatcaacggcg(GCA)5 10 CF973038 (T)31gaagctaatcagttgataatattgntataaacttaagccttgaaattccataggttgctacag(A)10 11 CF973772 (T)20ggtcaaacatttggatatatgacatgatttagaaggaaatttaacgaattt(CA)7 12 CF973931 (T)30nc(T)18 13 CA797701 (C)10(A)13 14 CA797707 (G)10(C)16 15 CA798179 (A)19(AGA)5* 16 CF974473 (A)10ggcaaaaagcatcatccaaatggaggctaaaaatacagagttagtaattttataatttaatgactacatgtcaaga(T)11 17 CF974677 (A)10ggcaaaaagcatcatccaaatggaggctaaaaatacagagttagtaattttataatttaatgactacatgtcaaga(T)11 18 CA794216 (T)24 19 CA794218 (T)29 20 CA794592 (G)25
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