The Computational analysis of Cocoa EST - SSR by TROLL(Martins et al. 2006)

 

SSR type
Total
Percentage

Monomer

31
48.44%

Dimer

17
26.56%

Trimer

15
23.43%

Pentamer

1
1.56%

Total number of sequences analyzed: 6581

Total number of SSRs found in sequences: 64

The mononucleotide 'T' has repeated 27 (42.18%) of the total SSR

Untitled Document
Sl.NO Accession NO SSR
1 CA794656(T)30
2 CA794702(A)23
3 CA794716(T)27
4 CA795625(A)21
5 CF972657(A)43
6 CF972688(T)23
7 CF972706(T)22
8 CF972741(T)34
9 CF973047(T)28
10 CF973082(T)27
11 CF973114(T)30
12 CF973130(T)26
13 CF973135(T)22
14 CF973148(T)20
15 CF973193(T)26
16 CF973245(T)27
17 CF973369(T)26
18 CF973643(T)29
19 CF973745(T)23
20 CF973799(T)20
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COCOA
 
 
 
 
EST derived SSR
Contigs derived SSR
Primer Results
 
 
OIL PALM
 
 
 
 
EST derived SSR
Contigs derived SSR
Primer Results
 
 
Cocoa & Oilpalm
 
 
SSR WEB TOOLS