The Computational analysis of Cocoa EST - SSR by TROLL(Martins et al. 2006)

 

SSR type
Total
Percentage

Monomer

31
48.44%

Dimer

17
26.56%

Trimer

15
23.43%

Pentamer

1
1.56%

Total number of sequences analyzed: 6581

Total number of SSRs found in sequences: 64

The mononucleotide 'T' has repeated 27 (42.18%) of the total SSR

Untitled Document
Sl.NO Accession NO SSR
1 CF973832(T)31
2 CF973845(A)23
3 CF973897(T)31
4 CF973967(T)22
5 CF974028(T)31
6 CF974118(T)24
7 CF974204(T)27
8 CF974386(T)31
9 CF974435(T)27
10 CF974588(T)33
11 CA794247(TC)14
12 CA79477(CT)10
13 CA795413(GA)13
14 CA795907(CT)10
15 CA796357(AT)11
16 CA797336(AT)11
17 CA797361(TA)14
18 CA797426(AG)11
19 CA797532(AT)11
20 CA797616(AG)11
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COCOA
 
 
 
 
EST derived SSR
Contigs derived SSR
Primer Results
 
 
OIL PALM
 
 
 
 
EST derived SSR
Contigs derived SSR
Primer Results
 
 
Cocoa & Oilpalm
 
 
SSR WEB TOOLS