Untitled Document
Sl.NO Accession NO SSR No SSR Type SSR Start End
1 CN5993911p1(T)711181
2 CN5999171p1(T)1065110
3 CN5999471p2(AG)102948
4 CN6007751p2(AG)112546
5 CN6008331p2(AG)111940
6 CN6012141p2(AG)141239
7 CN6000841p2(AG)16123154
8 CN6010541p2(AG)161546
9 CN6010861p2(AG)171548
10 CN6005271p2(AG)20746
11 CN5993871p2(AG)20140
12 CN5999771p2(AG)25150
13 CN6017351p2(AG)35170
14 CN5996141p2(AT)104564
15 CN6005751p2(AT)16314345
16 CN6010871p2(CT)10114133
17 CN5995041p2(CT)102746
18 CN6007851p2(CT)10182201
19 CN6001771p2(CT)10625
20 CN5998401p2(CT)1777110
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The in silico analysis of Oil Palm EST - SSR by MISA (Thiel et al. 2003)

 

SSR type
Total
Percentage

Monomer

84

49.70%

Dimer

29

17.15%

Trimer

13

7.69%

Tetramer

5

2.95%

Compound repeats

38

22.48%

Total number of sequences analyzed: 2413

Total number of SSRs found in sequences: 169

The mononucleotide 'T' has repeated 80 (47.33%) pf the total SSR

 

COCOA
 
 
 
EST derived SSR
Contigs derived SSR
Primer Results
 
OIL PALM
 
 
 
EST derived SSR
Contigs derived SSR
Primer Results
 
 
Cocoa & Oilpalm
 
 
SSR WEB TOOLS