Untitled Document
Sl.NO Accession NO SSR No SSR Type SSR Start End
1 CN6008051p2(CT)18126161
2 CN5996461p2(CT)193067
3 CN5998911p2(CT)30142201
4 CN6015142p2(GA)11322343
5 CN6017131p2(GA)37312385
6 CN6016361p2(TC)10827
7 CN6005451p2(TC)10213232
8 CN6011181p2(TC)11108129
9 CN6008281p2(TC)12932
10 CN6005561p2(TC)12285308
11 CN6005601p2(TC)20240279
12 CN5998311p3(AGG)9281307
13 CN6001661p3(CAC)7439459
14 CN6007492p3(CAG)7198218
15 CN6011782p3(CAG)7196216
16 CN6010561p3(CCG)890113
17 CN6009301p3(CCT)10433
18 CN6013421p3(CCT)75070
19 CN6014451p3(CCT)796116
20 CN6014921p3(CCT)9183209
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The in silico analysis of Oil Palm EST - SSR by MISA (Thiel et al. 2003)

 

SSR type
Total
Percentage

Monomer

84

49.70%

Dimer

29

17.15%

Trimer

13

7.69%

Tetramer

5

2.95%

Compound repeats

38

22.48%

Total number of sequences analyzed: 2413

Total number of SSRs found in sequences: 169

The mononucleotide 'T' has repeated 80 (47.33%) pf the total SSR

 

COCOA
 
 
 
EST derived SSR
Contigs derived SSR
Primer Results
 
OIL PALM
 
 
 
EST derived SSR
Contigs derived SSR
Primer Results
 
 
Cocoa & Oilpalm
 
 
SSR WEB TOOLS